A fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the 'scanpy' python package, and now can be used with 'Seurat' seamlessly.
| Version: | 1.1.1 |
| Depends: | R (≥ 4.1.0), methods, utils |
| Imports: | future, glmnet, Matrix, magrittr, Rcpp, RcppAnnoy, reticulate, rlang, Rtsne, Seurat, SeuratObject, tidytable, uwot (≥ 0.1.14) |
| LinkingTo: | Rcpp (≥ 1.0.8) |
| Suggests: | dplyr, knitr, rmarkdown, testthat (≥ 3.0.0), patchwork |
| Published: | 2024-02-13 |
| DOI: | 10.32614/CRAN.package.bbknnR |
| Author: | Yuchen Li [aut, cre] |
| Maintainer: | Yuchen Li <ycli1995 at outlook.com> |
| BugReports: | https://github.com/ycli1995/bbknnR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/ycli1995/bbknnR, https://github.com/Teichlab/bbknn, https://bbknn.readthedocs.io/en/latest/ |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | bbknnR results |
| Reference manual: | bbknnR.pdf |
| Vignettes: |
bbknnR-tutorial |
| Package source: | bbknnR_1.1.1.tar.gz |
| Windows binaries: | r-devel: bbknnR_1.1.1.zip, r-release: bbknnR_1.1.1.zip, r-oldrel: bbknnR_1.1.1.zip |
| macOS binaries: | r-devel (arm64): bbknnR_1.1.1.tgz, r-release (arm64): bbknnR_1.1.1.tgz, r-oldrel (arm64): bbknnR_1.1.1.tgz, r-devel (x86_64): bbknnR_1.1.1.tgz, r-release (x86_64): bbknnR_1.1.1.tgz, r-oldrel (x86_64): bbknnR_1.1.1.tgz |
| Old sources: | bbknnR archive |
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