Version: |
5.1.0 |
Depends: |
R (≥ 4.0.0), methods, SeuratObject (≥ 5.0.2) |
Imports: |
cluster, cowplot, fastDummies, fitdistrplus, future, future.apply, generics (≥ 0.1.3), ggplot2 (≥ 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden (≥ 0.3.1), lifecycle, lmtest, MASS, Matrix (≥ 1.5-0), matrixStats, miniUI, patchwork, pbapply, plotly (≥ 4.9.0), png, progressr, purrr, RANN, RColorBrewer, Rcpp (≥ 1.0.7), RcppAnnoy (≥ 0.0.18), RcppHNSW, reticulate, rlang, ROCR, RSpectra, Rtsne, scales, scattermore (≥ 1.2), sctransform (≥ 0.4.1), shiny, spatstat.explore, spatstat.geom, stats, tibble, tools, utils, uwot (≥ 0.1.10) |
LinkingTo: |
Rcpp (≥ 0.11.0), RcppEigen, RcppProgress |
Suggests: |
ape, arrow, BPCells, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST, DESeq2, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap, enrichR, mixtools, ggrastr, data.table, R.utils, presto, DelayedArray, harmony |
Published: |
2024-05-10 |
DOI: |
10.32614/CRAN.package.Seurat |
Author: |
Andrew Butler
[ctb],
Saket Choudhary
[ctb],
David Collins
[ctb],
Charlotte Darby
[ctb],
Jeff Farrell [ctb],
Isabella Grabski
[ctb],
Christoph Hafemeister
[ctb],
Yuhan Hao [ctb],
Austin Hartman
[ctb],
Paul Hoffman
[ctb],
Jaison Jain [ctb],
Longda Jiang
[ctb],
Madeline Kowalski
[ctb],
Skylar Li [ctb],
Gesmira Molla
[ctb],
Efthymia Papalexi
[ctb],
Patrick Roelli [ctb],
Rahul Satija
[aut, cre],
Karthik Shekhar [ctb],
Avi Srivastava
[ctb],
Tim Stuart [ctb],
Kristof Torkenczy
[ctb],
Shiwei Zheng
[ctb],
Satija Lab and Collaborators [fnd] |
Maintainer: |
Rahul Satija <seurat at nygenome.org> |
BugReports: |
https://github.com/satijalab/seurat/issues |
License: |
MIT + file LICENSE |
URL: |
https://satijalab.org/seurat, https://github.com/satijalab/seurat |
NeedsCompilation: |
yes |
Additional_repositories: |
https://satijalab.r-universe.dev,
https://bnprks.r-universe.dev |
Citation: |
Seurat citation info |
Materials: |
README NEWS |
In views: |
Omics |
CRAN checks: |
Seurat results |