Last updated on 2026-01-06 07:49:41 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [126s/145s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.641, system: 0.057, elapsed: 2.966 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.402, system: 0.125, elapsed: 11.644 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.231, system: 0.020, elapsed: 0.307 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.558, system: 0.837, elapsed: 12.792 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.006, elapsed: 0.233 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.586, system: 1.072, elapsed: 28.697 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.601, system: 0.043, elapsed: 1.802 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.450, system: 0.114, elapsed: 15.023 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.016, elapsed: 1.150 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.920, system: 0.716, elapsed: 42.372 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.004, elapsed: 0.200 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.975, system: 0.927, elapsed: 61.287 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.602, system: 0.043, elapsed: 2.012 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.575, system: 0.148, elapsed: 12.232 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.246, system: 0.020, elapsed: 0.290 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 10.401, system: 0.897, elapsed: 7.417 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.003, elapsed: 0.166 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.229, system: 0.242, elapsed: 0.862 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.165, system: 1.406, elapsed: 23.753 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.793, system: 0.044, elapsed: 1.434 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.590, system: 0.036, elapsed: 8.476 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.487, system: 0.022, elapsed: 0.187 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 11.793, system: 0.814, elapsed: 4.293 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.003, elapsed: 0.170 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 28.770, system: 1.065, elapsed: 10.438 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 52.912, system: 2.030, elapsed: 25.615 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/221s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.766, system: 0.086, elapsed: 2.539 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.761, system: 0.259, elapsed: 15.604 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.022, elapsed: 0.346 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.374, system: 0.547, elapsed: 6.984 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.010, elapsed: 0.241 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.842, system: 0.958, elapsed: 26.581 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.873, system: 0.110, elapsed: 2.790 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.872, system: 0.359, elapsed: 24.172 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.017, elapsed: 0.675 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.323, system: 0.441, elapsed: 14.515 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.520 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.991, system: 0.962, elapsed: 43.979 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.591, system: 0.037, elapsed: 4.190 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.576, system: 0.071, elapsed: 25.259 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.013, elapsed: 0.601 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.382, system: 0.425, elapsed: 13.584 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.004, elapsed: 0.561 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.206, system: 0.317, elapsed: 2.290 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.805, system: 0.895, elapsed: 48.427 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.652, system: 0.038, elapsed: 5.014 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.646, system: 0.084, elapsed: 28.377 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.014, elapsed: 0.553 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.279, system: 0.426, elapsed: 12.875 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.541 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.626, system: 0.537, elapsed: 40.145 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.236, system: 1.125, elapsed: 89.498 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64