Implements a procedure to automatically generate 2D masks for clusters on dimensional reduction plots from methods like t-SNE (t-distributed stochastic neighbor embedding) or UMAP (uniform manifold approximation and projection), with a focus on single-cell RNA-sequencing data.
| Version: | 0.3.0 |
| Depends: | R (≥ 3.5) |
| Imports: | data.table, spatstat.geom, spatstat.explore, lifecycle, ggplot2, scales, polyclip, ggforce, vctrs, rlang, cli, systemfonts |
| Suggests: | testthat (≥ 3.0.0), rmarkdown, knitr, patchwork, ggnewscale, ggsci, Seurat, SeuratObject |
| Published: | 2026-01-12 |
| DOI: | 10.32614/CRAN.package.mascarade (may not be active yet) |
| Author: | Alexey Sergushichev [aut, cre] |
| Maintainer: | Alexey Sergushichev <alsergbox at gmail.com> |
| BugReports: | https://github.com/alserglab/mascarade/issues |
| License: | MIT + file LICENSE |
| URL: | https://alserglab.github.io/mascarade/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | mascarade results |
| Reference manual: | mascarade.html , mascarade.pdf |
| Vignettes: |
Gallery of mascarade-generaded masks (source, R code) Using mascarade package (source, R code) |
| Package source: | mascarade_0.3.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): mascarade_0.3.0.tgz, r-oldrel (arm64): mascarade_0.3.0.tgz, r-release (x86_64): mascarade_0.3.0.tgz, r-oldrel (x86_64): mascarade_0.3.0.tgz |
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