Last updated on 2026-01-05 18:50:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 28.23 | 324.89 | 353.12 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 17.98 | 211.97 | 229.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 55.00 | 438.27 | 493.27 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 50.00 | 471.40 | 521.40 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 34.00 | 388.00 | 422.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 27.44 | 259.53 | 286.97 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 24.62 | 259.32 | 283.94 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 34.00 | 389.00 | 423.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 50.00 | 536.00 | 586.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [125s/130s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-01 17:33:58.857158 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-01 17:34:03.286137 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-01 17:34:07.211 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-01 17:34:14.40131 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:18.239591 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:21.860912 gimli2 4070234 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4077433 on localhost:11284 at 17:34:22.207
2026-01-01 17:34:26.136291 gimli2 4070234 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.276 s.
2026-01-01 17:34:26.234057 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:29.863106 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:33.52433 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-01 17:34:37.573389 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:41.181707 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:44.609673 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:46.793419 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:46.820531 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:50.619113 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.651681 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.678051 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.710994 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.74674 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.783682 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.819642 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:34:50.862305 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:34:54.561219 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
starting worker pid=4085123 on localhost:11284 at 17:34:54.964
starting worker pid=4085122 on localhost:11284 at 17:34:55.086
2026-01-01 17:35:03.241241 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:06.796136 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:06.81112 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:06.820058 gimli2 4070234 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=4088122 on localhost:11284 at 17:35:07.168
2026-01-01 17:35:11.341286 gimli2 4070234 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.515 s.} ...
2026-01-01 17:35:11.348966 gimli2 4070234 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4089010 on localhost:11284 at 17:35:11.660
2026-01-01 17:35:16.043855 gimli2 4070234 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.7 s.
2026-01-01 17:35:16.046621 gimli2 4070234 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=4090328 on localhost:11284 at 17:35:16.319
2026-01-01 17:35:20.915447 gimli2 4070234 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.869 s.
2026-01-01 17:35:20.917757 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.107 s.
2026-01-01 17:35:20.92345 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:20.935056 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:20.96871 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:20.981395 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:21.120071 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:21.128463 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:21.155816 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:23.522751 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:23.535557 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:23.562869 gimli2 4070234 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-31 r89265), detected cores: 32
2026-01-01 17:35:23.575354 gimli2 4070234 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-01 17:35:23.630141 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-01 17:35:27.455985 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:31.423687 gimli2 4070234 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4094524 on localhost:11284 at 17:35:31.756
2026-01-01 17:35:35.813134 gimli2 4070234 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.38900000000001 s.
2026-01-01 17:35:35.816724 gimli2 4070234 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=4095698 on localhost:11284 at 17:35:36.228
2026-01-01 17:35:41.620733 gimli2 4070234 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.804 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-01 17:35:41.749959 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:44.371631 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:48.046754 gimli2 4070234 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4099960 on localhost:11284 at 17:35:48.591
2026-01-01 17:35:51.995698 gimli2 4070234 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.949 s.
2026-01-01 17:35:52.025778 gimli2 4070234 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-01 17:35:55.782105 gimli2 4070234 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=4101923 on localhost:11284 at 17:35:56.200
2026-01-01 17:36:02.56278 gimli2 4070234 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.77799999999999 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [74s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-04 13:24:10.938179 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-04 13:24:15.77254 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-04 13:24:20.801895 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-04 13:24:29.228573 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:24:33.209021 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:24:37.316973 gimli1 3725723 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3747245 on localhost:11335 at 13:24:37.734
2026-01-04 13:24:40.472102 gimli1 3725723 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.155 s.
2026-01-04 13:24:40.529152 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:24:44.20803 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:24:48.726783 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-04 13:24:52.469485 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:24:56.428115 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:24:58.452993 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:00.915828 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:00.949935 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:04.561905 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.58888 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.621015 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.651492 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.689549 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.725969 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.761854 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:04.799114 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:08.830428 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
starting worker pid=3777010 on localhost:11335 at 13:25:09.286
starting worker pid=3777009 on localhost:11335 at 13:25:09.314
2026-01-04 13:25:15.547751 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:19.660513 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:19.677256 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:19.684587 gimli1 3725723 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3785648 on localhost:11335 at 13:25:20.019
2026-01-04 13:25:23.512105 gimli1 3725723 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.82599999999999 s.} ...
2026-01-04 13:25:23.51406 gimli1 3725723 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3787969 on localhost:11335 at 13:25:23.842
2026-01-04 13:25:26.498822 gimli1 3725723 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.985 s.
2026-01-04 13:25:26.500772 gimli1 3725723 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3789767 on localhost:11335 at 13:25:26.839
2026-01-04 13:25:30.299876 gimli1 3725723 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.79899999999999 s.
2026-01-04 13:25:30.301629 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 10.625 s.
2026-01-04 13:25:30.304831 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:30.325535 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:30.342536 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:30.365283 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:30.431084 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:30.443334 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:30.452724 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:33.140672 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:33.159842 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:33.179076 gimli1 3725723 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-03 r89269), detected cores: 64
2026-01-04 13:25:33.201338 gimli1 3725723 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-04 13:25:33.25029 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-04 13:25:37.566969 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:41.105669 gimli1 3725723 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3801767 on localhost:11335 at 13:25:41.398
2026-01-04 13:25:44.600104 gimli1 3725723 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.494 s.
2026-01-04 13:25:44.601854 gimli1 3725723 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3806930 on localhost:11335 at 13:25:45.064
2026-01-04 13:25:48.990728 gimli1 3725723 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.389 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-04 13:25:49.077634 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:52.273129 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:25:55.9435 gimli1 3725723 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3820623 on localhost:11335 at 13:25:56.241
2026-01-04 13:25:58.674265 gimli1 3725723 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.72799999999999 s.
2026-01-04 13:25:58.706123 gimli1 3725723 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-04 13:26:02.719007 gimli1 3725723 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3828590 on localhost:11335 at 13:26:03.087
2026-01-04 13:26:07.076056 gimli1 3725723 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.354 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [148s/266s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 09:46:23.709236 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 09:46:34.697957 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 09:46:42.643006 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 09:46:57.969079 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:05.557094 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:13.347102 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3922716 on localhost:11855 at 09:47:13.833
2026-01-05 09:47:21.765285 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 8.41800000000001 s.
2026-01-05 09:47:21.932159 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:30.215089 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:38.425941 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 09:47:47.025972 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:47:54.951175 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:04.057666 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:08.966644 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:09.012892 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:17.531778 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.621188 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.699775 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.797599 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.885784 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:17.996089 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:18.048639 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:18.132452 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:27.06988 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
starting worker pid=3928157 on localhost:11855 at 09:48:27.903
starting worker pid=3928159 on localhost:11855 at 09:48:28.020
2026-01-05 09:48:44.310732 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:48:51.770049 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:48:51.797215 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:48:51.814903 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3930093 on localhost:11855 at 09:48:52.485
2026-01-05 09:49:02.01143 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 10.189 s.} ...
2026-01-05 09:49:02.022075 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3930753 on localhost:11855 at 09:49:02.756
2026-01-05 09:49:11.746874 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.72499999999999 s.
2026-01-05 09:49:11.7516 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3931201 on localhost:11855 at 09:49:12.389
2026-01-05 09:49:19.912603 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 8.16 s.
2026-01-05 09:49:19.919873 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 28.123 s.
2026-01-05 09:49:19.937478 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:19.976138 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.038899 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:20.064098 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.267375 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:20.293799 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:20.343469 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:49:26.151195 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:26.181562 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:26.20961 gannet.stats.ox.ac.uk 3920913 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-05 r89271), detected cores: 24
2026-01-05 09:49:26.230101 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 09:49:26.358172 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 09:49:36.310678 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:49:43.297617 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3932155 on localhost:11855 at 09:49:43.831
2026-01-05 09:49:52.963407 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.66499999999999 s.
2026-01-05 09:49:52.967907 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3932443 on localhost:11855 at 09:49:53.533
2026-01-05 09:50:02.254054 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 9.286 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 09:50:02.362058 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:07.716729 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:15.84552 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3934311 on localhost:11855 at 09:50:16.452
2026-01-05 09:50:23.208552 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 7.363 s.
2026-01-05 09:50:23.265082 gannet.stats.ox.ac.uk 3920913 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 09:50:30.776981 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3935002 on localhost:11855 at 09:50:31.266
2026-01-05 09:50:41.025531 gannet.stats.ox.ac.uk 3920913 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 10.244 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [142s/346s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1195763 on localhost:11437 at 08:35:08.561
2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s.
2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
starting worker pid=1204902 on localhost:11437 at 08:36:31.437
starting worker pid=1204903 on localhost:11437 at 08:36:31.474
2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1214291 on localhost:11437 at 08:37:10.686
2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ...
2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1215630 on localhost:11437 at 08:37:22.953
2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s.
2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1217201 on localhost:11437 at 08:37:35.401
2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s.
2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s.
2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1221451 on localhost:11437 at 08:38:19.028
2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s.
2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1223815 on localhost:11437 at 08:38:31.976
2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1228863 on localhost:11437 at 08:39:04.873
2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s.
2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1232048 on localhost:11437 at 08:39:29.330
2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [138s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-28 08:07:14.983295 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-28 08:07:20.761603 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-28 08:07:26.256556 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-28 08:07:34.62888 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:40.061649 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:45.520758 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57576 on localhost:11962 at 08:07:45.797
2025-12-28 08:07:48.273229 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2025-12-28 08:07:48.30742 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:53.609794 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:58.723841 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-28 08:08:04.001682 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:09.158044 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:12.430488 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:16.4253 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:16.442885 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:21.85535 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.863912 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.872194 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.884614 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.896352 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.908764 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.921765 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.939867 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:26.679342 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
starting worker pid=98488 on localhost:11962 at 08:08:26.914
starting worker pid=74240 on localhost:11962 at 08:08:26.951
2025-12-28 08:08:33.251411 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:38.451837 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:38.454274 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:38.457405 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=42448 on localhost:11962 at 08:08:38.678
2025-12-28 08:08:41.530292 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.06 s.} ...
2025-12-28 08:08:41.533111 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=75936 on localhost:11962 at 08:08:41.804
2025-12-28 08:08:44.169725 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64 s.
2025-12-28 08:08:44.171978 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=18388 on localhost:11962 at 08:08:44.433
2025-12-28 08:08:47.46496 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.28999999999999 s.
2025-12-28 08:08:47.46755 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.00999999999999 s.
2025-12-28 08:08:47.472283 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.474993 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.488424 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.491324 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.525316 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.528052 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.538139 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:51.739838 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.742298 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.752914 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.7552 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.785591 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-28 08:08:57.012718 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:02.290384 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=106096 on localhost:11962 at 08:09:02.538
2025-12-28 08:09:05.114394 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.83 s.
2025-12-28 08:09:05.11712 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=88036 on localhost:11962 at 08:09:05.400
2025-12-28 08:09:08.255834 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.14 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-28 08:09:08.303428 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:12.520372 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:17.735925 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=87524 on localhost:11962 at 08:09:17.949
2025-12-28 08:09:20.30537 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.58 s.
2025-12-28 08:09:20.33904 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:25.637269 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=16280 on localhost:11962 at 08:09:25.880
2025-12-28 08:09:29.107894 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.46000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/159s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-31 05:51:37.065154 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-31 05:51:42.478396 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-31 05:51:48.09118 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-31 05:51:56.987226 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:01.769045 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:07.119879 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=282814 on localhost:11834 at 05:52:07.538
2025-12-31 05:52:11.707957 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.588 s.
2025-12-31 05:52:11.803711 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:16.506167 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:22.068821 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-31 05:52:29.106988 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:34.541048 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:38.569597 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:41.964602 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:41.984196 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:46.895425 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.927531 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.9538 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:46.987125 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.019147 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.055639 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.087324 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:52:47.121603 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:52:51.812376 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
starting worker pid=293951 on localhost:11834 at 05:52:52.211
starting worker pid=293950 on localhost:11834 at 05:52:52.239
2025-12-31 05:53:01.383796 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:06.536372 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:06.548104 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:06.552353 gimli2 272625 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=298127 on localhost:11834 at 05:53:06.995
2025-12-31 05:53:11.609254 gimli2 272625 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.05099999999999 s.} ...
2025-12-31 05:53:11.611636 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=299590 on localhost:11834 at 05:53:12.039
2025-12-31 05:53:15.95726 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.346 s.
2025-12-31 05:53:15.959813 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=300761 on localhost:11834 at 05:53:16.418
2025-12-31 05:53:21.684875 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.72499999999999 s.
2025-12-31 05:53:21.687026 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 15.139 s.
2025-12-31 05:53:21.695373 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.707232 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.738234 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.749171 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.818922 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:21.831198 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:21.84898 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:26.128451 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:26.138744 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:26.170421 gimli2 272625 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-28 r89259), detected cores: 32
2025-12-31 05:53:26.183431 gimli2 272625 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-31 05:53:26.253613 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-31 05:53:32.030399 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:37.859029 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=306572 on localhost:11834 at 05:53:38.182
2025-12-31 05:53:41.779016 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.91999999999999 s.
2025-12-31 05:53:41.781405 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=307217 on localhost:11834 at 05:53:42.267
2025-12-31 05:53:46.955048 gimli2 272625 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.173 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-31 05:53:47.064667 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:51.230833 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:53:56.652967 gimli2 272625 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=310940 on localhost:11834 at 05:53:57.041
2025-12-31 05:54:00.706646 gimli2 272625 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.05799999999999 s.
2025-12-31 05:54:00.771285 gimli2 272625 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-31 05:54:05.411923 gimli2 272625 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=314006 on localhost:11834 at 05:54:05.730
2025-12-31 05:54:11.027203 gimli2 272625 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.613 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/160s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 05:44:29.082076 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 05:44:34.806196 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 05:44:39.875712 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 05:44:49.355435 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:54.18401 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:59.041965 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3976251 on localhost:11408 at 05:44:59.513
2026-01-03 05:45:03.667814 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.626 s.
2026-01-03 05:45:03.762693 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:08.497214 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:14.152887 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 05:45:20.237874 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:25.662703 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:29.65236 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:33.023897 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:33.060222 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:38.085997 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.105462 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.138207 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.173842 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.21122 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.246883 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.276348 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.300142 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:43.258345 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=3987415 on localhost:11408 at 05:45:43.802
starting worker pid=3987414 on localhost:11408 at 05:45:43.816
2026-01-03 05:45:52.363297 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:57.541566 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:57.555188 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:45:57.559301 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3990961 on localhost:11408 at 05:45:57.976
2026-01-03 05:46:02.385395 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.81999999999999 s.} ...
2026-01-03 05:46:02.387968 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3992179 on localhost:11408 at 05:46:02.793
2026-01-03 05:46:07.312619 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.925 s.
2026-01-03 05:46:07.315118 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3993786 on localhost:11408 at 05:46:07.697
2026-01-03 05:46:12.376384 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.06099999999999 s.
2026-01-03 05:46:12.378369 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.823 s.
2026-01-03 05:46:12.38217 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.394746 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.416452 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.430821 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.501802 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.51537 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.546135 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:16.437677 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.448217 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.478409 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.491296 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.520907 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 05:46:22.84798 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:28.499179 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3999710 on localhost:11408 at 05:46:28.961
2026-01-03 05:46:34.219338 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.72 s.
2026-01-03 05:46:34.229123 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=4000963 on localhost:11408 at 05:46:34.610
2026-01-03 05:46:39.4661 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.245 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 05:46:39.53447 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:43.184434 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:48.122644 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4003547 on localhost:11408 at 05:46:48.533
2026-01-03 05:46:52.617395 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.495 s.
2026-01-03 05:46:52.67356 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:57.375579 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=4007188 on localhost:11408 at 05:46:57.864
2026-01-03 05:47:03.341136 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.96000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [139s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-30 08:08:14.182268 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-30 08:08:20.325994 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-30 08:08:25.799113 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-30 08:08:34.108032 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:39.390525 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:44.768944 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=94644 on localhost:11160 at 08:08:45.034
2025-12-30 08:08:47.553555 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77999999999999 s.
2025-12-30 08:08:47.593273 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:52.351681 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:08:57.394154 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-30 08:09:02.658722 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:07.402854 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:11.123077 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:15.259742 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:15.274969 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:20.558825 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.571301 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.583354 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.595873 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.608872 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.622789 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.636492 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:20.65132 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:25.862618 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=83740 on localhost:11160 at 08:09:26.080
starting worker pid=45912 on localhost:11160 at 08:09:26.114
2025-12-30 08:09:32.449658 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:37.663107 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:37.666264 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:37.67101 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=68052 on localhost:11160 at 08:09:37.945
2025-12-30 08:09:40.705235 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.04000000000001 s.} ...
2025-12-30 08:09:40.708325 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=20832 on localhost:11160 at 08:09:40.979
2025-12-30 08:09:43.382665 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.66999999999999 s.
2025-12-30 08:09:43.38544 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=41104 on localhost:11160 at 08:09:43.643
2025-12-30 08:09:46.776338 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.39 s.
2025-12-30 08:09:46.779217 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.11 s.
2025-12-30 08:09:46.784163 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.786905 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.8003 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.802989 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.833863 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:46.835928 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:46.845323 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:09:50.895351 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:50.898243 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:50.908879 CRANWIN3 30768 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-30 08:09:50.910907 CRANWIN3 30768 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-30 08:09:50.946792 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-30 08:09:56.11001 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:01.382585 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=72996 on localhost:11160 at 08:10:01.642
2025-12-30 08:10:04.190579 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.80000000000001 s.
2025-12-30 08:10:04.193182 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=41724 on localhost:11160 at 08:10:04.416
2025-12-30 08:10:07.333802 CRANWIN3 30768 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.14 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-30 08:10:07.408224 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:11.800842 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:17.375875 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=44860 on localhost:11160 at 08:10:17.623
2025-12-30 08:10:20.299313 CRANWIN3 30768 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.91999999999999 s.
2025-12-30 08:10:20.332435 CRANWIN3 30768 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-30 08:10:25.736205 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=55612 on localhost:11160 at 08:10:25.992
2025-12-30 08:10:29.293153 CRANWIN3 30768 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.56 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 16:57:23.62878 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 16:57:32.82465 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 16:57:41.360011 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 16:57:52.975546 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:01.455334 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:09.93103 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26956 on localhost:11044 at 16:58:10.276
2026-01-05 16:58:13.740134 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2026-01-05 16:58:13.806471 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:21.393564 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:29.374142 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 16:58:37.271728 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:44.88705 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:49.915431 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:56.499752 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:56.512752 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:04.740577 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.756815 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.773356 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.791154 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.808977 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.826021 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.843517 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.857898 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:13.496917 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=80984 on localhost:11044 at 16:59:13.810
starting worker pid=84680 on localhost:11044 at 16:59:13.889
2026-01-05 16:59:23.145014 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:31.432715 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:31.43565 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:31.440607 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=11840 on localhost:11044 at 16:59:31.767
2026-01-05 16:59:35.084238 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.64000000000001 s.} ...
2026-01-05 16:59:35.08664 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=21596 on localhost:11044 at 16:59:35.437
2026-01-05 16:59:38.869814 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78 s.
2026-01-05 16:59:38.872782 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=61816 on localhost:11044 at 16:59:39.139
2026-01-05 16:59:43.150226 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.28 s.
2026-01-05 16:59:43.15355 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 11.71 s.
2026-01-05 16:59:43.16102 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.165756 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.184282 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.18671 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.224996 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.229204 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.245437 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:50.067591 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.07189 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.091592 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.096234 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.145882 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 16:59:57.978731 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:05.671469 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=40176 on localhost:11044 at 17:00:05.955
2026-01-05 17:00:09.651378 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.96000000000001 s.
2026-01-05 17:00:09.654629 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=111168 on localhost:11044 at 17:00:10.016
2026-01-05 17:00:14.191393 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.54999999999998 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:00:14.24468 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:20.969078 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:28.496578 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=104596 on localhost:11044 at 17:00:28.779
2026-01-05 17:00:32.33652 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2026-01-05 17:00:32.373872 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:40.090548 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=66204 on localhost:11044 at 17:00:40.410
2026-01-05 17:00:44.82498 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64