vermeulen: 'Biomarker' Data Set by Vermeulen et al. (2009)

The 'biomarker' data set by Vermeulen et al. (2009) <doi:10.1016/S1470-2045(09)70154-8> is provided. The data source, however, is by Ruijter et al. (2013) <doi:10.1016/j.ymeth.2012.08.011>. The original data set may be downloaded from <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>. This data set is for a real-time quantitative polymerase chain reaction ('PCR') experiment that comprises the raw fluorescence data of 24,576 amplification curves. This data set comprises 59 genes of interest and 5 reference genes. Each gene was assessed on 366 neuroblastoma complementary DNA ('cDNA') samples and on 18 standard dilution series samples (10-fold 5-point dilution series x 3 replicates + no template controls ('NTC') x 3 replicates).

Version: 0.1.1
Depends: R (≥ 2.10)
Imports: memoise
Suggests: dplyr, ggplot2, rmarkdown, spelling, testthat (≥ 3.0.0), tibble
Published: 2022-11-10
Author: Ramiro Magno ORCID iD [aut, cre], Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno at gmail.com>
BugReports: https://github.com/ramiromagno/vermeulen/issues
License: CC BY 4.0
URL: https://github.com/ramiromagno/vermeulen, https://rmagno.eu/vermeulen/
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: vermeulen results

Documentation:

Reference manual: vermeulen.pdf

Downloads:

Package source: vermeulen_0.1.1.tar.gz
Windows binaries: r-devel: vermeulen_0.1.1.zip, r-release: vermeulen_0.1.1.zip, r-oldrel: vermeulen_0.1.1.zip
macOS binaries: r-release (arm64): vermeulen_0.1.1.tgz, r-oldrel (arm64): vermeulen_0.1.1.tgz, r-release (x86_64): vermeulen_0.1.1.tgz

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