Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
| Version: | 1.2.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | ape, dplyr, ggplot2, ggtree, igraph, parallelDist, patchwork, phangorn, Rcpp, reshape2, RcppParallel, RhpcBLASctl, stringr, tidygraph |
| LinkingTo: | Rcpp, RcppArmadillo, RcppParallel |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2023-06-15 |
| DOI: | 10.32614/CRAN.package.scistreer |
| Author: | Teng Gao [cre, aut], Evan Biederstedt [aut], Peter Kharchenko [aut], Yufeng Wu [aut] |
| Maintainer: | Teng Gao <tgaoteng at gmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/kharchenkolab/scistreer, https://kharchenkolab.github.io/scistreer/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Materials: | README |
| CRAN checks: | scistreer results |
| Reference manual: | scistreer.pdf |
| Package source: | scistreer_1.2.0.tar.gz |
| Windows binaries: | r-devel: scistreer_1.2.0.zip, r-release: scistreer_1.2.0.zip, r-oldrel: scistreer_1.2.0.zip |
| macOS binaries: | r-devel (arm64): scistreer_1.2.0.tgz, r-release (arm64): scistreer_1.2.0.tgz, r-oldrel (arm64): scistreer_1.2.0.tgz, r-devel (x86_64): scistreer_1.2.0.tgz, r-release (x86_64): scistreer_1.2.0.tgz, r-oldrel (x86_64): scistreer_1.2.0.tgz |
| Old sources: | scistreer archive |
| Reverse imports: | numbat |
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