microbial: Do 16s Data Analysis and Generate Figures

Provides functions to enhance the available statistical analysis procedures in R by providing simple functions to analysis and visualize the 16S rRNA data.Here we present a tutorial with minimum working examples to demonstrate usage and dependencies.

Version: 0.0.21
Depends: R (≥ 3.5.0)
Imports: dplyr, plyr, magrittr, broom, phyloseq, vegan, rlang, ggplot2, ggpubr, DESeq2, SummarizedExperiment, S4Vectors, rstatix, tidyr, phangorn, randomForest, edgeR
Suggests: markdown, dada2, rmarkdown, knitr, tools, Biostrings, DECIPHER, MASS, testthat
Published: 2024-05-15
DOI: 10.32614/CRAN.package.microbial
Author: Kai Guo [aut, cre], Pan Gao [aut]
Maintainer: Kai Guo <guokai8 at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: microbial results


Reference manual: microbial.pdf
Vignettes: microbial


Package source: microbial_0.0.21.tar.gz
Windows binaries: r-devel: microbial_0.0.21.zip, r-release: microbial_0.0.21.zip, r-oldrel: microbial_0.0.21.zip
macOS binaries: r-release (arm64): microbial_0.0.21.tgz, r-oldrel (arm64): microbial_0.0.21.tgz, r-release (x86_64): microbial_0.0.21.tgz, r-oldrel (x86_64): microbial_0.0.21.tgz
Old sources: microbial archive


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