hdbayes: Bayesian Analysis of Generalized Linear Models with Historical Data
User-friendly functions for leveraging (multiple) historical data set(s) for generalized linear models. The package contains functions for sampling from the posterior distribution of a generalized linear model using the prior induced by the Bayesian hierarchical model, power prior by Ibrahim and Chen (2000) <doi:10.1214/ss/1009212673>, normalized power prior by Duan et al. (2006) <doi:10.1002/env.752>, normalized asymptotic power prior by Ibrahim et al. (2015) <doi:10.1002/sim.6728>, commensurate prior by Hobbs et al. (2011) <doi:10.1111/j.1541-0420.2011.01564.x>, robust meta-analytic-predictive prior by Schmidli et al. (2014) <doi:10.1111/biom.12242>, the latent exchangeability prior by Alt et al. (2023) <doi:10.48550/arXiv.2303.05223>, and a normal (or half-normal) prior. Functions for computing the marginal log-likelihood under each of the implemented priors are also included. The package compiles all the 'CmdStan' models once during installation using the 'instantiate' package.
| Version: | 0.1.1 |
| Depends: | R (≥ 4.2.0) |
| Imports: | instantiate (≥ 0.1.0), callr, fs, formula.tools, stats, posterior, enrichwith, mclust, bridgesampling, mvtnorm |
| Suggests: | cmdstanr (≥ 0.6.0), ggplot2, knitr, parallel, rmarkdown, tibble, dplyr |
| Published: | 2024-08-22 |
| DOI: | 10.32614/CRAN.package.hdbayes |
| Author: | Ethan M. Alt 
[aut, cre, cph],
Xinxin Chen [aut],
Luiz M. Carvalho [aut],
Joseph G. Ibrahim [aut],
Xiuya Chang [ctb] |
| Maintainer: | Ethan M. Alt <ethanalt at live.unc.edu> |
| BugReports: | https://github.com/ethan-alt/hdbayes/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/ethan-alt/hdbayes |
| NeedsCompilation: | yes |
| SystemRequirements: | CmdStan (https://mc-stan.org/users/interfaces/cmdstan) |
| Additional_repositories: | https://mc-stan.org/r-packages/ |
| Materials: | NEWS |
| CRAN checks: | hdbayes results |
Documentation:
| Reference manual: | hdbayes.pdf |
| Vignettes: |
AIDS-Progression (source) |
Downloads:
| Package source: | hdbayes_0.1.1.tar.gz |
| Windows binaries: | r-devel: hdbayes_0.1.1.zip, r-release: hdbayes_0.1.1.zip, r-oldrel: hdbayes_0.1.1.zip |
| macOS binaries: | r-devel (arm64): hdbayes_0.1.1.tgz, r-release (arm64): hdbayes_0.1.1.tgz, r-oldrel (arm64): hdbayes_0.1.1.tgz, r-devel (x86_64): hdbayes_0.1.1.tgz, r-release (x86_64): hdbayes_0.1.1.tgz, r-oldrel (x86_64): hdbayes_0.1.1.tgz |
| Old sources: | hdbayes archive |
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