The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
Version: | 1.0.3 |
Depends: | R (≥ 3.5), ape (≥ 5.5) |
Imports: | methods, robustbase, phylolm (≥ 2.6.5), nloptr, pracma, foreach, doParallel, HDInterval |
Suggests: | covr, knitr, rmarkdown, spelling, geiger, testthat (≥ 3.0.0) |
Published: | 2024-10-01 |
DOI: | 10.32614/CRAN.package.cauphy |
Author: | Gilles Didier [aut, cph], Paul Bastide [aut, cre] |
Maintainer: | Paul Bastide <paul.bastide at cnrs.fr> |
BugReports: | https://github.com/gilles-didier/cauphy/issues |
License: | GPL (≥ 3) |
URL: | https://gilles-didier.github.io/cauphy/ |
NeedsCompilation: | yes |
Language: | en-US |
Citation: | cauphy citation info |
Materials: | README NEWS |
CRAN checks: | cauphy results |
Reference manual: | cauphy.pdf |
Vignettes: |
Example Analysis (source, R code) |
Package source: | cauphy_1.0.3.tar.gz |
Windows binaries: | r-devel: cauphy_1.0.3.zip, r-release: cauphy_1.0.3.zip, r-oldrel: cauphy_1.0.3.zip |
macOS binaries: | r-devel (arm64): cauphy_1.0.3.tgz, r-release (arm64): cauphy_1.0.3.tgz, r-oldrel (arm64): cauphy_1.0.3.tgz, r-devel (x86_64): cauphy_1.0.3.tgz, r-release (x86_64): cauphy_1.0.3.tgz, r-oldrel (x86_64): cauphy_1.0.3.tgz |
Old sources: | cauphy archive |
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