baker: "Nested Partially Latent Class Models"
Provides functions to specify, fit and visualize nested partially-latent class models ( Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>; Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>; Wu and Chen (2021) <doi:10.1002/sim.8804>) for inference of population disease etiology and individual diagnosis. In the motivating Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities of interest sum to one hundred percent, the PERCH scientists frequently refer to them as population etiology pie and individual etiology pie, hence the name of the package.
| Version: | 1.0.3 |
| Depends: | R (≥ 4.3.0) |
| Imports: | rjags (≥ 4-6), R2jags (≥ 0.5), lubridate (≥ 1.3), binom (≥ 1.1), coda (≥ 0.16), robCompositions (≥ 2.0.3), ggplot2 (≥ 1.0), ggpubr (≥ 0.4.0), gridExtra (≥ 2.0), reshape2 (≥ 1.4), mgcv (≥ 1.8-6), mvbutils (≥ 2.7.4.1), shinyFiles (≥ 0.6), shinydashboard (≥ 0.5.1), stats, utils, abind |
| Suggests: | spelling, knitr, testthat, rmarkdown, covr, knitcitations, sf |
| Published: | 2024-01-30 |
| DOI: | 10.32614/CRAN.package.baker |
| Author: | Zhenke Wu  [cre,
aut, cph],
Scott Zeger [aut],
John Muschelli
[ctb],
Irena Chen [ctb] |
| Maintainer: | Zhenke Wu <zhenkewu at gmail.com> |
| BugReports: | https://github.com/zhenkewu/baker/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/zhenkewu/baker, https://zhenkewu.com/baker/ |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (>= 4.3.2) (http://mcmc-jags.sourceforge.net) |
| Language: | en-US |
| Citation: | baker citation info |
| Materials: | README NEWS |
| CRAN checks: | baker results |
Documentation:
| Reference manual: | baker.pdf |
| Vignettes: |
Vignettes for baker: An R package for fitting nested partially latent class models |
Downloads:
| Package source: | baker_1.0.3.tar.gz |
| Windows binaries: | r-devel: baker_1.0.3.zip, r-release: baker_1.0.3.zip, r-oldrel: baker_1.0.3.zip |
| macOS binaries: | r-devel (arm64): baker_1.0.3.tgz, r-release (arm64): baker_1.0.3.tgz, r-oldrel (arm64): baker_1.0.3.tgz, r-devel (x86_64): baker_1.0.3.tgz, r-release (x86_64): baker_1.0.3.tgz, r-oldrel (x86_64): baker_1.0.3.tgz |
| Old sources: | baker archive |
Linking:
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