Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
| Version: | 1.8.0 |
| Depends: | R (≥ 3.5.0), MSEtool (≥ 3.0.0) |
| Imports: | TMB (≥ 1.9.0), abind, dplyr, gplots, graphics, methods, pbapply, rmarkdown, snowfall, stats, utils, vars |
| LinkingTo: | TMB, RcppEigen |
| Suggests: | caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis |
| Published: | 2024-11-07 |
| DOI: | 10.32614/CRAN.package.SAMtool |
| Author: | Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut] |
| Maintainer: | Quang Huynh <quang at bluematterscience.com> |
| BugReports: | https://github.com/Blue-Matter/SAMtool/issues |
| License: | GPL-3 |
| URL: | https://openmse.com, https://samtool.openmse.com, https://github.com/Blue-Matter/SAMtool |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | SAMtool results |
| Reference manual: | SAMtool.pdf |
| Package source: | SAMtool_1.8.0.tar.gz |
| Windows binaries: | r-devel: SAMtool_1.8.0.zip, r-release: SAMtool_1.8.0.zip, r-oldrel: SAMtool_1.8.0.zip |
| macOS binaries: | r-devel (arm64): SAMtool_1.8.0.tgz, r-release (arm64): SAMtool_1.8.0.tgz, r-oldrel (arm64): SAMtool_1.8.0.tgz, r-devel (x86_64): SAMtool_1.8.0.tgz, r-release (x86_64): SAMtool_1.8.0.tgz, r-oldrel (x86_64): SAMtool_1.8.0.tgz |
| Old sources: | SAMtool archive |
| Reverse depends: | openMSE |
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