Last updated on 2024-04-23 07:51:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 534.19 | 88.45 | 622.64 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 370.59 | 79.29 | 449.88 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 848.15 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 873.76 | NOTE | |||
| r-prerel-macos-arm64 | 1.1.3 | 192.00 | NOTE | |||
| r-prerel-windows-x86_64 | 1.1.3 | 306.00 | 140.00 | 446.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.3 | 334.83 | 101.75 | 436.58 | NOTE | |
| r-release-linux-x86_64 | 1.1.3 | 342.47 | 102.28 | 444.75 | OK | |
| r-release-macos-arm64 | 1.1.3 | 267.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.3 | 464.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.3 | 420.00 | 170.00 | 590.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.3 | 240.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.3 | 388.00 | 153.00 | 541.00 | OK |
Version: 1.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Biostrings’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.3
Check: Rd files
Result: NOTE
checkRd: (-1) get_tidysq_options.Rd:37: Lost braces
37 | \item tidysq_pillar_max_width [code{integer(1)}]\cr
| ^
checkRd: (-1) read_fasta.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_fasta.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64
Version: 1.1.3
Check: examples
Result: ERROR
Running examples in ‘tidysq-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: export_sq
> ### Title: Export sq objects into other formats
> ### Aliases: export_sq
>
> ### ** Examples
>
> # DNA and amino acid sequences can be exported to most packages
> sq_ami <- sq(c("MVVGL", "LAVPP"), alphabet = "ami_bsc")
> export_sq(sq_ami, "ape::AAbin")
2 amino acid sequences in a list
All sequences of the same length: 5
> export_sq(sq_ami, "bioseq::bioseq_aa")
AA vector of 2 sequences
> MVVGL
> LAVPP
> export_sq(sq_ami, "Biostrings::AAStringSet", c("one", "two"))
Error in export_sq.sq_ami_bsc(sq_ami, "Biostrings::AAStringSet", c("one", :
Assertion on '"Biostrings"' failed: you need to install 'Biostrings' package.
Calls: export_sq ... export_sq.sq_ami_bsc -> assert_package_installed -> <Anonymous> -> mstop
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [12s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidysq)
Attaching package: 'tidysq'
The following object is masked from 'package:base':
paste
>
> test_check("tidysq")
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 701 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• warning handling on C++ side is poorly implemented (1):
'test-warnings.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-casting.R:49:3'): (code run outside of `test_that()`) ──────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'Biostrings'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-casting.R:48:1
2. │ └─base::withCallingHandlers(...)
3. └─base::loadNamespace(x) at test-casting.R:49:3
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-pkg-Biostrings.R:29:1'): (code run outside of `test_that()`) ───
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'Biostrings'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-pkg-Biostrings.R:29:1
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 701 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.3
Check: installed package size
Result: NOTE
installed size is 43.5Mb
sub-directories of 1Mb or more:
libs 42.7Mb
Flavors: r-prerel-macos-arm64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64