Last updated on 2026-02-12 07:51:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 19.43 | 192.25 | 211.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 48.00 | 411.82 | 459.82 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 48.00 | 446.23 | 494.23 | OK | |
| r-devel-macos-arm64 | 2.0.5 | 7.00 | 78.00 | 85.00 | ERROR | |
| r-devel-windows-x86_64 | 2.0.5 | 32.00 | 262.00 | 294.00 | OK | |
| r-patched-linux-x86_64 | 2.0.5 | 25.42 | 263.96 | 289.38 | OK | |
| r-release-linux-x86_64 | 2.0.5 | 24.15 | 265.37 | 289.52 | OK | |
| r-release-macos-arm64 | 2.0.5 | OK | ||||
| r-release-macos-x86_64 | 2.0.5 | 17.00 | 243.00 | 260.00 | OK | |
| r-release-windows-x86_64 | 2.0.5 | 33.00 | 262.00 | 295.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.5 | OK | ||||
| r-oldrel-macos-x86_64 | 2.0.5 | 19.00 | 183.00 | 202.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.5 | 42.00 | 344.00 | 386.00 | OK |
Version: 2.0.5
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [11s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(iGraphMatch)
Thanks for using iGraphMatch!
We'd love to get feedback on what you like, what you don't like,
and how you are using the package.
See ?iGraphMatch for contact information.
>
> test_check("iGraphMatch")
Sparse part
10 x 10 sparse Matrix of class "dgCMatrix"
[1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55
[2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20
[3,] -1.10 . . . 0.0069 . . . . 0.56
[4,] -1.10 -1.10 . . . -0.37 . . 1.6000 .
[5,] -0.28 . . . . . . . -0.1800 .
[6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50
[7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . .
[8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . .
[9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10
[10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 .
plus left factor
10 x 3 Matrix of class "dgeMatrix"
[,1] [,2] [,3]
[1,] 0.11613577 0.3100942 0.9830440
[2,] 0.30302180 0.7425694 0.6392046
[3,] 0.47880269 0.6389113 0.6607546
[4,] 0.34483055 0.9925160 0.5283594
[5,] 0.60071414 0.1282698 0.3174938
[6,] 0.07608332 0.8832396 0.7678555
[7,] 0.95599261 0.8100834 0.5263085
[8,] 0.02220682 0.8218512 0.7323019
[9,] 0.84171063 0.8347027 0.3076657
[10,] 0.63244245 0.7327322 0.4041733
times right factor transpose
10 x 3 Matrix of class "dgeMatrix"
[,1] [,2] [,3]
[1,] 0.2044024 0.47922247 0.5089206
[2,] 0.9856331 0.85031192 0.4944386
[3,] 0.5663108 0.42233068 0.7970529
[4,] 0.2803751 0.03139212 0.5669589
[5,] 0.1850557 0.25814665 0.1066968
[6,] 0.7580614 0.33484473 0.8076484
[7,] 0.5667813 0.13354967 0.5671121
[8,] 0.9321736 0.49954639 0.2122409
[9,] 0.6386933 0.80213563 0.7495793
[10,] 0.7007481 0.33715324 0.3072184
Sparse part
10 x 10 sparse Matrix of class "dgCMatrix"
[1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55
[2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20
[3,] -1.10 . . . 0.0069 . . . . 0.56
[4,] -1.10 -1.10 . . . -0.37 . . 1.6000 .
[5,] -0.28 . . . . . . . -0.1800 .
[6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50
[7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . .
[8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . .
[9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10
[10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 .
plus left factor
10 x 3 Matrix of class "dgeMatrix"
[,1] [,2] [,3]
[1,] 0.11613577 0.3100942 0.9830440
[2,] 0.30302180 0.7425694 0.6392046
[3,] 0.47880269 0.6389113 0.6607546
[4,] 0.34483055 0.9925160 0.5283594
[5,] 0.60071414 0.1282698 0.3174938
[6,] 0.07608332 0.8832396 0.7678555
[7,] 0.95599261 0.8100834 0.5263085
[8,] 0.02220682 0.8218512 0.7323019
[9,] 0.84171063 0.8347027 0.3076657
[10,] 0.63244245 0.7327322 0.4041733
times right factor transpose
10 x 3 Matrix of class "dgeMatrix"
[,1] [,2] [,3]
[1,] 0.2044024 0.47922247 0.5089206
[2,] 0.9856331 0.85031192 0.4944386
[3,] 0.5663108 0.42233068 0.7970529
[4,] 0.2803751 0.03139212 0.5669589
[5,] 0.1850557 0.25814665 0.1066968
[6,] 0.7580614 0.33484473 0.8076484
[7,] 0.5667813 0.13354967 0.5671121
[8,] 0.9321736 0.49954639 0.2122409
[9,] 0.6386933 0.80213563 0.7495793
[10,] 0.7007481 0.33715324 0.3072184
splrMatrix
Dimension: 10 10
Lower rank matrix is rank: 3
*** caught segfault ***
address 0x1, cause 'invalid permissions'
Traceback:
1: eigen(A[[ch]])
2: graph_match_Umeyama(A, B, seeds, similarity)
3: gm(A, B, seeds, startm, method = "Umeyama")
4: eval(code, test_env)
5: eval(code, test_env)
6: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
7: doTryCatch(return(expr), name, parentenv, handler)
8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
9: tryCatchList(expr, classes, parentenv, handlers)
10: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
11: doWithOneRestart(return(expr), restart)
12: withOneRestart(expr, restarts[[1L]])
13: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
14: test_code(code, parent.frame())
15: test_that("matching correspondence between graph1 and graph2 for directed graphs", { tt <- gm(A, B, seeds, startm, method = "Umeyama") expect_snapshot_output(print(tt)) expect_snapshot_output(print(round(as.matrix(tt$soft), 4))) })
16: eval(code, test_env)
17: eval(code, test_env)
18: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
19: doTryCatch(return(expr), name, parentenv, handler)
20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
21: tryCatchList(expr, classes, parentenv, handlers)
22: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
23: doWithOneRestart(return(expr), restart)
24: withOneRestart(expr, restarts[[1L]])
25: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
26: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
27: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
28: FUN(X[[i]], ...)
29: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
30: doTryCatch(return(expr), name, parentenv, handler)
31: tryCatchOne(expr, names, parentenv, handlers[[1L]])
32: tryCatchList(expr, classes, parentenv, handlers)
33: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
34: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
35: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
36: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
37: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
38: test_check("iGraphMatch")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-macos-arm64