Last updated on 2023-06-10 19:56:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 4.58 | 136.44 | 141.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 3.21 | 102.78 | 105.99 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 177.78 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 193.76 | OK | |||
| r-devel-windows-x86_64 | 0.3.2 | 5.00 | 134.00 | 139.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 5.97 | 126.98 | 132.95 | OK | |
| r-release-linux-x86_64 | 0.3.2 | 3.49 | 126.67 | 130.16 | OK | |
| r-release-macos-arm64 | 0.3.2 | 62.00 | OK | |||
| r-release-macos-x86_64 | 0.3.2 | 101.00 | OK | |||
| r-release-windows-x86_64 | 0.3.2 | 7.00 | 157.00 | 164.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.2 | 56.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.2 | 67.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.3.2 | 6.00 | 150.00 | 156.00 | OK |
Version: 0.3.2
Check: examples
Result: ERROR
Running examples in ‘butcher-Ex.R’ failed
The error most likely occurred in:
> ### Name: axe-pls
> ### Title: Axing mixOmics models
> ### Aliases: axe-pls axe-mixo_pls axe_call.mixo_pls axe_call.mixo_spls
> ### axe_data.mixo_pls axe_data.mixo_spls axe_fitted.mixo_pls
> ### axe_fitted.mixo_spls
>
> ### ** Examples
>
> ## Don't show:
> if (rlang::is_installed("mixOmics")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ library(butcher)
+ do.call(library, list(package = "mixOmics"))
+
+ # pls ------------------------------------------------------------------
+ fit_mod <- function() {
+ boop <- runif(1e6)
+ pls(matrix(rnorm(2e4), ncol = 2), rnorm(1e4), mode = "classic")
+ }
+
+ mod_fit <- fit_mod()
+ mod_res <- butcher(mod_fit)
+
+ weigh(mod_fit)
+ weigh(mod_res)
+
+ new_data <- matrix(1:2, ncol = 2)
+ colnames(new_data) <- c("X1", "X2")
+ predict(mod_fit, new_data)
+ predict(mod_res, new_data)
+ ## Don't show:
+ }) # examplesIf
> library(butcher)
> do.call(library, list(package = "mixOmics"))
Loading required package: MASS
Loading required package: lattice
Loading required package: ggplot2
Loaded mixOmics 6.19.1
Thank you for using mixOmics!
Tutorials: http://mixomics.org
Bookdown vignette: https://mixomicsteam.github.io/Bookdown
Questions, issues: Follow the prompts at http://mixomics.org/contact-us
Cite us: citation('mixOmics')
> fit_mod <- function() {
+ boop <- runif(1e+06)
+ pls(matrix(rnorm(20000), ncol = 2), rnorm(10000), mode = "classic")
+ }
> mod_fit <- fit_mod()
> mod_res <- butcher(mod_fit)
> weigh(mod_fit)
# A tibble: 24 × 2
object size
<chr> <dbl>
1 X 0.842
2 Y 0.762
3 names.sample 0.681
4 variates.X 0.201
5 variates.Y 0.201
6 input.X 0.161
7 call 0.00129
8 loadings.X 0.000776
9 loadings.Y 0.000696
10 loadings.star1 0.0006
# ℹ 14 more rows
> weigh(mod_res)
# A tibble: 24 × 2
object size
<chr> <dbl>
1 X 0.842
2 Y 0.762
3 variates.X 0.201
4 variates.Y 0.201
5 loadings.X 0.000776
6 loadings.Y 0.000696
7 loadings.star1 0.0006
8 mat.c 0.0006
9 loadings.star2 0.00052
10 prop_expl_var.X 0.000352
# ℹ 14 more rows
> new_data <- matrix(1:2, ncol = 2)
> colnames(new_data) <- c("X1", "X2")
> predict(mod_fit, new_data)
Error in is(object, c("rgcca", "sparse.rgcca")) :
length(class2) == 1L is not TRUE
Calls: <Anonymous> ... eval -> predict -> predict.mixo_pls -> is -> stopifnot
Execution halted
Flavor: r-oldrel-macos-x86_64