CRAN Package Check Results for Package BWGS

Last updated on 2024-06-16 07:58:22 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1 13.15 83.64 96.79 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.1 8.65 61.66 70.31 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.1 115.09 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.1 111.74 NOTE
r-devel-windows-x86_64 0.2.1 10.00 74.00 84.00 NOTE
r-patched-linux-x86_64 0.2.1 13.34 79.99 93.33 NOTE
r-release-linux-x86_64 0.2.1 11.29 77.37 88.66 NOTE
r-release-macos-arm64 0.2.1 37.00 NOTE
r-release-macos-x86_64 0.2.1 53.00 NOTE
r-release-windows-x86_64 0.2.1 10.00 75.00 85.00 NOTE
r-oldrel-macos-arm64 0.2.1 40.00 OK
r-oldrel-macos-x86_64 0.2.1 62.00 OK
r-oldrel-windows-x86_64 0.2.1 13.00 88.00 101.00 OK

Check Details

Version: 0.2.1
Check: Rd files
Result: NOTE checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup? 27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup? 59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup? 25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup? 29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.} | ^ checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup? 49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64