794f0578096910a005da773deb7d3d02 *DESCRIPTION
0a5e48e774469979d8eecbdd8bfa0db1 *NAMESPACE
eed83ee3e111f47cedb8f1f2f7d7531e *R/HMMplot.R
1223502e836bd99cde601aef17b28461 *R/RcppExports.R
9934b96d3fd036bd5b99a96efe9fcffd *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
5a44c3b2867270b1a389a251cbb48b91 *R/build_hmm.R
2332d880e0dc41399dc1c899de92c36b *R/build_lcm.R
44f552885fc718b88845163819738dbc *R/build_mhmm.R
6d6f1645e0cccbfb9a936f270abcaf67 *R/build_mm.R
48218555761ba39f4e5350394a02db8f *R/build_mmm.R
64f3f15184e747598854e6e9dce40d0d *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
03d7b8b93f6f03d87ee47eaed554c6ba *R/fit_model.R
0555a72060f32bc86522448fe8ebfa4a *R/forwardBackward.R
9e3215c4e848ff7dfd42324d8a71be3c *R/gridplot.R
6fbfa3d29d62329d951ec18183f3a612 *R/help_data.R
93138615ff5a0db50232dffe5fd181f2 *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
0ea0a6b2f472f2907e3872ecfa915c10 *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
68b539df5ec06dfe4fdc99cc3398ac15 *R/logLik.hmm.R
0d17f85686370ef6d21d13281b88af7a *R/logLik.mhmm.R
73e969fdeed6ef84167017fb197fdbe7 *R/mHMMplotgrid.R
61eadb7af0f1315e4a5873d54c3d2d49 *R/mHMMplotint.R
a106586cd9fbbda7cbbc3514e23e8702 *R/mc_to_sc.R
6edf113670336e90d4f195fab3d82b1c *R/mc_to_sc_data.R
bd0e47063666ea050c52704153055282 *R/mhmm_biofam.R
b26a09b6751c589a6c0af1f9c9ef809d *R/mhmm_mvad.R
7a8c412949d24f10cc4b0ec394be0256 *R/mssplot.R
91fc31d10a9d33ec495ae1bd622931f9 *R/plot.hmm.R
fca2de08ac8bccd48e863d612c64a9b6 *R/plot.igraph2.R
277d87ffe867a2ea83a0a1e85a03b8a6 *R/plot.mhmm.R
b997b61328533a11d69d127228047e52 *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
fd61ed3b61557c3d1c1dc9c74f4b4915 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
753e7c4008ffd7232468049c9693529f *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
ed9a27625b0c99ce582602ce99cd8a7e *R/seqHMM-package.R
d2230ead1609466c2b477e1ac18d667a *R/simulate_hmm.R
22dbb7ba3ebd24473a2a31e302bbcd96 *R/simulate_mhmm.R
7f4609c5babbb85bd0e0f7b2a0548a2d *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
3f034a25788ab38f23c33ca82a16214e *R/ssp.R
33003cf44fae931ded6ac9656089a56c *R/ssplot.R
72ca0b1b6989b9d4403e06ab9ad7d8d6 *R/ssplotM.R
a544423d3bf91bbc48c8df22b6cb36da *R/summary.mhmm.R
caeb9ebe8f2b08c4578d6c1b2baba705 *R/trim_hmm.R
4bd40ef8c5276e4f83f604620fba481a *R/vcov.mhmm.R
f1ff7829e2741471659fc5db28787ce1 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
ba734b4e08dcb06805c34737565a0bda *inst/doc/seqHMM.R
1ab23e7160c472941ad23356ab766723 *inst/doc/seqHMM.Rnw
65f7a709041163cb01ef310568125ccc *inst/doc/seqHMM.pdf
9196956b51927b19f37f91519031a838 *man/TraMineR_imports.Rd
8cc9bce0c969aa5c5dd48d6144102261 *man/biofam3c.Rd
d4b743bdc45472914c15a1ce2f9bd93a *man/build_hmm.Rd
8a40cf3abc74ea333d754b21ddcc322d *man/build_lcm.Rd
91bdf56ee4059d3a167106684a6df3fe *man/build_mhmm.Rd
ba55b19e448dfc766b17ff17d6702b6a *man/build_mm.Rd
8d47bb1af7d27375b6d709e28138066a *man/build_mmm.Rd
874232c5f6da15304da1f3e46617121b *man/colorpalette.Rd
adb55b4a7836caf4e956bd8942ef61c7 *man/fit_model.Rd
86b7583855ffaccd7b2e102eeeec47ca *man/forward_backward.Rd
a02c247fc39c255c85b59d9f94c9d235 *man/gridplot.Rd
c6502aa0116fdba60aa0e3e6428beace *man/hidden_paths.Rd
4982eeeac5024b1dbc2ee51e49ec8e84 *man/hmm_biofam.Rd
a186c1abea107a303df9cf7b2ba11ceb *man/hmm_mvad.Rd
acab89d27889b7dd9fc99376ada8b175 *man/logLik.hmm.Rd
9a29abab5384338ff566a1e6f5a886f7 *man/logLik.mhmm.Rd
e4b5579a2827c492250b1cfd1859a871 *man/mc_to_sc.Rd
aea9d0d05d432b53fd37ec77028f93e1 *man/mc_to_sc_data.Rd
96b2e99c80c8e8ac071a73b5205a3b7b *man/mhmm_biofam.Rd
b7811ce54ede52bcb0092fed7c41e4bb *man/mhmm_mvad.Rd
b0b7e15724cefe86b01fab3f99e7ca77 *man/mssplot.Rd
19b2d6c5103e2102fdc3cab8b8f5bbb2 *man/plot.hmm.Rd
fa545d665a013cf78eb504629004aa0f *man/plot.mhmm.Rd
56c5e7f78aa8372e9613d7013932a02d *man/plot.ssp.Rd
01aa3787f0ec26b4b044d64efedffe22 *man/plot_colors.Rd
1c8fbec1d06c0a91a887f178c1ef96b0 *man/posterior_probs.Rd
520c81a9020a80d611a723c12def971c *man/print.Rd
11a1321afbe63f336de11ae56b12d73c *man/separate_mhmm.Rd
699d7b90d811c714124f4f6267fa5a7e *man/seqHMM-deprecated.Rd
f4dd3bcbbd3463f4a65a8489df2178c0 *man/seqHMM.Rd
b060599dc83055c2b7b1bafb3d88d826 *man/simulate_hmm.Rd
30b52173bcd4d2a5c203bef3fcac6b3d *man/simulate_mhmm.Rd
539cd7375989a0c7a17adfea719a4597 *man/simulate_pars.Rd
bfd16c1ab5e16d5d1772d35d469a0075 *man/ssp.Rd
bc0294c7777213648f43ae77e5b9741a *man/ssplot.Rd
8d8fd64986ade6aca0eb42ff61e6f176 *man/summary.mhmm.Rd
b097b912e8315bc6a4228ac11c692255 *man/trim_model.Rd
490dc1c0fbbfbe7aad8d01bd385d2807 *man/vcov.mhmm.Rd
04976a3924525458b83260d5a07b4eb2 *src/EM.cpp
7a8db40faf4827fbb1702d79e703ada2 *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
9a308e00d1efb90cb7caf781033b634f *src/RcppExports.cpp
fee655ea908c7d7f6ce37e439451d0c9 *src/forwardbackward.cpp
1a26b2fe28c4040e0a1846421f18e3bc *src/forwardbackwardx.cpp
08d30ba849a440f19ad6611d7922fcd0 *src/internalBackward.cpp
77c340d97e3949b6c3b90761d87d6cdd *src/internalForward.cpp
a9f40ef668f39485c63059564e4e02ba *src/logLikHMM.cpp
e39281793d1b988b3635ea79498a0712 *src/logLikMixHMM.cpp
96791a241beca3d939798b1881f52a82 *src/logSumExp.cpp
42cae4b67c0915fa289cc344985c6ac2 *src/log_EM.cpp
d85801b6944d49f69556ade7fb0c7bab *src/log_EMx.cpp
dd4dff6062c7fd538727428d47cad3fe *src/log_forwardbackward.cpp
d166e8229774bf2f6849f434ddc4eecf *src/log_forwardbackwardx.cpp
d857c92b388db9408f61489f1166807f *src/log_internalBackward.cpp
be13be672e90a76c3e7229a80ce20e6b *src/log_internalForward.cpp
aa83cfa7bfb055823fb55bee5052f251 *src/log_logLikHMM.cpp
9938c47822d5f4a8d8038f6624246882 *src/log_logLikMixHMM.cpp
6634c35c32514598397d68420ac72d8e *src/log_objective.cpp
bb3d9fbe7fedc77070455d96e3a226e8 *src/log_objectivex.cpp
ae0f4b279344940f9d32fa4663de64e7 *src/log_optCoef.cpp
80169f3eb49d23ca1dc6516a6675a59f *src/objective.cpp
5b89e790bf92cb6c0c1fc5c0c8305a22 *src/objectivex.cpp
705226e532b28bb132e191a6cf1e1632 *src/optCoef.cpp
1ab1b744fd8db1f3cc171a9596175104 *src/reparma.cpp
54960d2859f7837500e7428c8d242ba1 *src/seqHMM.h
5119d011b5ab288c8b9b854e301cfe55 *src/varcoef.cpp
28dbe71491df737a854b6da5a76c9b53 *src/viterbi.cpp
c6fedcfd9c3dc85b048279f3e5c4fd5a *src/viterbix.cpp
3c56cb36b28f2491708bb45add9ec5a1 *vignettes/references.bib
1ab23e7160c472941ad23356ab766723 *vignettes/seqHMM.Rnw
