9d7a12661985d2af3fb71b2324ecc472 *DESCRIPTION
7350277caa9685016e64833f6a4da00b *NAMESPACE
9ffee0b22949a7143e78f8948c124871 *R/PCA.R
589c8ec2cbab6bd6fc807c45e8c41eb9 *R/RcppExports.R
b1d5f127a6961b11122ac3e19797297e *R/Rphenograph.R
d8716bbe538d4b45ef80aaa38d6e1ff0 *R/cluster_analysis.R
b338ee8a173b887db70e36b9105893bb *R/clustering.R
12742c5d957d7713f886f7d38f4f69c2 *R/differential_gene_expression.R
70998fdc2cf409046f8aa91f29cf9e73 *R/initialize.R
6341cae64586ce2533d3d14cdf9f3ccc *R/plot.R
f2abe50c23882f1430ba724600ea00ec *R/preprocess.R
0255d9f7ee80240231e46c6a7cb3d548 *R/read_data.R
25d0e89a4e1e3547c85c10f6731a1c6f *R/simiarlity.R
4151172770734ab56e8b0f70ce767def *R/sysdata.rda
03cd749ba8921f0b33563845e381a083 *R/tSNE.R
4c28f4e66d035d231bc3fdc57d66de44 *R/utils.R
25034c00d701d1442c8a1d397a62fdfe *README.md
9a230b995118ae1de37974d3aebba1cb *build/vignette.rds
0318617661dcf5cf8627dc13bb77a9da *inst/doc/lcmv.R
103e65bd93002064f725366659cd4df3 *inst/doc/lcmv.Rmd
0d25930b308a8b9fffb3f0b8d4c9913e *inst/doc/lcmv.html
f6751a342faf0d5c34e5469b26fd67ea *inst/extdata/LCMV1_small.txt
a86c3594123066196b766eb90413b31a *inst/extdata/LCMV2_small.txt
d5ea3f7fb4c84c4832e65add30bb883d *man/PCA.Rd
602f55a5b21f02081bcb03edda372ca5 *man/Rphenograph.Rd
2b0b308d6666eee49091fa5f918c6db1 *man/add.confounder.variables.Rd
037c9bbdb7e6c23761682d77d1e7d102 *man/assess.cluster.similarity.Rd
fcc33031febe51ab2b56e436b62c7021 *man/cell.cycle.score.Rd
a4f7a8aa2e57a70d2d284b2598280812 *man/cluster.analysis.Rd
7a08e178b25454e54703aaa08d7474f4 *man/controlled.mean.score.Rd
416ee12f03ff5cfffd6764009643ca30 *man/download_LCMV.Rd
995a6a3db6fe8278350dfdb4e1716366 *man/find_neighbors.Rd
07b6ea2acb47081f1680c2446b0ea8dc *man/get.cluster.names.Rd
dc694663353a501323d876d692f58234 *man/get.robust.cluster.similarity.Rd
dca8b9894b5b3c0f3169fc67f1afc769 *man/get.robust.markers.Rd
ea3dead75e5ae742897d6d3f3e9cdb14 *man/get.variable.genes.Rd
071c85f8fd7b223f899f9f988105cc9d *man/initialize.project.Rd
a09bb753b840feb4fd005e44046052ba *man/mitochondrial.score.Rd
44c68d5a56a3255ad7933aaffc851a86 *man/plot_PCA.Rd
4e76eb980c2d15fac376ab6859e1e6f5 *man/plot_contour_overlay_tSNE.Rd
67780d9e316273a24331b8ad3a6ae418 *man/plot_pair_scatter.Rd
f8dbec8d919e33477e98fe8a1648cd33 *man/plot_simple_heatmap.Rd
1381d284d78a8ca72b4871fd40124cb4 *man/read.data.Rd
73a277f4e93809a7a4455dbb6fa2933b *man/read.preclustered.datasets.Rd
10ed61c837f488dbc0ee3580ae11b299 *man/read_10x_data.Rd
260606eb5f62c2d92402f490f6ef781b *man/ribosomal.score.Rd
8f127feed99f7f296f0a8ca56c9aa796 *man/run_tSNE.Rd
1aaecab00d457235fd4b8967e714f22b *man/setup_LCMV_example.Rd
dbeac1d0ae30821953227d3f20fc8d6c *man/setup_pooled_env.Rd
5e0456a1e44c15647a150d476eace9de *man/summarize.Rd
4dac4cae4889cdba63eea1c8a00cb956 *man/visualize.cluster.cors.heatmaps.Rd
e990048f4a713d5c9cb0be5695facdb5 *man/visualize.cluster.similarity.stats.Rd
b30e34ff8af8d721fea6f8e6bad7a5bd *src/RcppExports.cpp
6e8da9fb4cd35c711d4086902a931e05 *src/jaccard_coeff.cpp
b87d0bc751cd15b89b9540d6981f94ee *tests/testthat.R
c87e2328fa8798f256282e7effa5826c *tests/testthat/test-clustering.R
24d43c8f3bbfed9ddf03b4a6aa068c16 *tests/testthat/test-get_dist.R
10c2b5face138a9636b257e45a7ac162 *tests/testthat/test-preprocessing.R
b38f419a9219971274c80bf3cee6c3c3 *vignettes/figs/Clustering.modularity.png
70c49764bb3971957cb993d23e286a52 *vignettes/figs/LCMV1_LCMV2_similarity.png
9aaedc7499f19e705eea8d1400fc0ab2 *vignettes/figs/PC1_heatmap.png
1eafd0f1a0e2653da42b371bc57b7fa7 *vignettes/figs/PC2_heatmap.png
6cd008373cf613b8d9850e8c782bd27c *vignettes/figs/PCA.png
06ff74a5de5e8fac399b5371081647bc *vignettes/figs/cluster.size.png
7c22c3926ef51ec11d64b36ab1c6412b *vignettes/figs/cor_FC.png
83977c810baccb4bf13cd7d88783cc5e *vignettes/figs/diff.genes.png
cd9793f600c223eda21f32f74cba982a *vignettes/figs/post_stats.png
826592b81e3640591d7fee9f81f8c7d1 *vignettes/figs/pre_stats.png
040684965408bca3d0b703fd5fa5e2d0 *vignettes/figs/rotation.png
cff2906a28f9feb5da5f9985ded6e596 *vignettes/figs/tsne.png
ec5120a02121dffa268c5d569bfd50ed *vignettes/figs/violin.png
103e65bd93002064f725366659cd4df3 *vignettes/lcmv.Rmd
