0f112d9244137af7d20d26f5b4c0ba4b *DESCRIPTION
464964b977f7d9b4014b8dcbc4a1ec84 *NAMESPACE
42aa9a0028cdb75e83aaa77021b566ec *R/rbamtools.r
21ef538497daa3c2127a1753c9219338 *inst/extdata/accepted_hits.bam
8f5f1e1e72e3ece387b08bdd8c67e2a5 *inst/extdata/accepted_hits.bam.bai
f57763fcab5eb869e80f213d8ea2543f *man/as.data.frame-methods.Rd
30d7c7bd0d5fd9cd4df88f915ad59893 *man/bamAlign-class.Rd
30621f2c19c7096c7160c0b4a3f12768 *man/bamClose-methods.Rd
57dadc8cba67c2c865538eed208c12d7 *man/bamClose.Rd
446303d22518d7eb4a1b1daad0728395 *man/bamHeader-class.Rd
33a60893af5ff1feb99d6c2bc7275ead *man/bamRange-class.Rd
aa33f3c7c2559ed436568f510680dd99 *man/bamRange.Rd
a3bc0b7002f696faa377bc33f51f9a03 *man/bamReader-class.Rd
db5ec32a4ce1cccf7a8bd6c86ca7d5f1 *man/bamReader.Rd
462c9ffc4cd6c87e6cfc4cae54090217 *man/bamSave-methods.Rd
efeca7cc8bd33dac149498689ee57820 *man/bamSave.Rd
a2529758f2d5cbc8c4acebad4d87471e *man/bamSort.Rd
72cfa99d5303fe268dff5348d465125d *man/bamWriter-class.Rd
005ba84bec1a8cf37d2b0e5c74afb147 *man/bamWriter.Rd
7b4e6459adb30b3e4bda76490d9de310 *man/cigarData-methods.Rd
a974877be01b2b8adb5b3b06927fb655 *man/createIndex-methods.Rd
f2e56fa9242d11f32f57ab5105cdce8f *man/createIndex.Rd
04585874db89f28ffd7e13b00906f0e3 *man/failedQC-methods.Rd
06e044dfd8b0810be1e2224160969f0b *man/filename-methods.Rd
0d3b2ce10c1d9a3703ae755d442b19fb *man/filename.Rd
88d673b455ff01230b57e8c72d686237 *man/firstInPair-methods.Rd
6710490aa3e002f7c65bb57c07f65a7e *man/flag-methods.Rd
4e7592a2f23bfc8ecc75f8b45e414ffb *man/flag.Rd
ba12a91f7ad5fba582fde26570e77ed5 *man/getHeaderText-methods.Rd
61e8279984e7ec2cf23778507132409d *man/getHeaderText.Rd
405ad17269913b557400a0cb4c80a4e9 *man/getNextAlign-methods.Rd
713dab48bcec599e8f5d0a56f694b0be *man/getNextAlign.Rd
0a5d05fa216b8daed0cd05ab8ac37434 *man/getPrevAlign-methods.Rd
cd2cae0b05936dc7a97144a8488c2f38 *man/getPrevAlign.Rd
2f0579b51e515f24ef0dce1b97298649 *man/getRefCount-methods.Rd
7ad5270e7e007e2d797475150b3f2fb8 *man/getRefCount.Rd
4f524685f8c59a1df97b943251eb989b *man/getRefData-methods.Rd
5e2a4bfd40c6c1ac295532c4ffdfa17f *man/getRefData.Rd
df444417cf7f14ce55f19b286b5e0243 *man/getVal.Rd
08d20d049140f971e23b89f8107f0d11 *man/headerLine-class.Rd
05d0e3dbafef447ffcd1631f6085b919 *man/headerProgram-class.Rd
fa343ae510b4af99f693024f9ee86124 *man/headerReadGroup-class.Rd
597af46b153875ef31ba0b921498db3c *man/index.initialized-methods.Rd
d1bfd8770e6218e266d21a47c655c1f4 *man/insertPastCurrent-methods.Rd
3081cab9f559342084505a1d65d5ca13 *man/insertSize-methods.Rd
fa9a2d8ba0a843f61bbe7dd38e911bef *man/insertSize.Rd
f751053f860eca91415a5a3fbe0de24b *man/isOpen-methods.Rd
d411fbf2c5602d0e338411c9495debdc *man/isOpen.Rd
004114a98eac1e9c6fd98899d5b4253e *man/mapQuality-methods.Rd
7417331a87cc24369930f5aba28d0197 *man/mapQuality.Rd
b9f1a9712cfc4c7582eeb91ea084bd68 *man/matePosition-methods.Rd
7905e73b9276d4f41709aa1d51e6432f *man/matePosition.Rd
2c5afc9742f4e88de68d59d0f9ebfd20 *man/mateRefID-methods.Rd
83cb8fba2117fb099338c5488aafd2d1 *man/mateReverseStrand-methods.Rd
e18ec305d8555c4e1f4830f30bd20c15 *man/mateUnmapped-methods.Rd
12481a2116fbfe37e9bf2448863d2afd *man/name-methods.Rd
2860df8d83c0d0885bfb0663b41224a4 *man/paired-methods.Rd
e289621de640cabdf3322b8ce3a12ff1 *man/pcrORopt_duplicate-methods.Rd
c192fa25a397f89731f8d42c3d948d1d *man/pop_front-methods.Rd
1857d62f23f4edbb62e72ae0109f7060 *man/position-methods.Rd
23973d37dace4eee3659ec7148eb23ca *man/position.Rd
bbcf18b4f36c965db6d1754cc108bfb1 *man/properPair-methods.Rd
c23dad13fccdd89341fa3023d7689047 *man/push_back-methods.Rd
fc1e203edbc1ed3f0e718d46c060ab26 *man/push_back.Rd
5b9650e9e4a59255820c881c59de2bac *man/qualities-methods.Rd
61dec0f5fe4dfc06b5147e66fe59af53 *man/rbamtools-package.Rd
50688bf4ae893899c0ea05fd196f433b *man/readBases-methods.Rd
9995566487630c8c620cda2ac04370e0 *man/refID-methods.Rd
57c02ccaf1789df6156bb6a71281ca80 *man/refSeqDict-class.Rd
29d57a103ff6b0973ac8bc7488cf011d *man/reverseStrand-methods.Rd
b87e3696757a12c79224110dcc9a0dfc *man/secondaryAlign-methods.Rd
cd0ffa1c3755506dfa7708d6e7ccbaf2 *man/setVal.Rd
4cc4ad3d12a607059114f0dccecd556a *man/size.Rd
f96eb0f38ef5ad4a87decb03ed184a37 *man/unmapped-methods.Rd
f30e4fe019817f6ec9543bdb65e28b15 *man/windBack-methods.Rd
43e02d520d43b8534abd57393edf1e6b *man/windBack.Rd
580e78c87481d015812ee327b47f2b44 *man/writeCurrentAlign-methods.Rd
4f74f8b15ef93934b85af3dd8a74c39b *man/writeCurrentAlign.Rd
1909330c349a0b8654595c7accb89fb1 *src/Makevars
b2ab8d847907bfe5f92a3c04cdf4d2a0 *src/Makevars.win
e61e02be997eb4dcd84c84004dd820cb *src/align_list.h
48ac679c6ca77060f9e1a58098c60e02 *src/rbamtools.c
31a8dfe6987d7d6a231cf76918048a25 *src/rbamtools.h
2e4c02f66ddf5b45e5f82ff579740386 *src/samtools/LICENSE
2ed5e20907d44f4c2584ef197296abc6 *src/samtools/bam.c
6bcc5b8b46cd84f07cee413c91a11378 *src/samtools/bam.h
01906a11e72adf5c589997eb45e8ba6f *src/samtools/bam_aux.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/samtools/bam_endian.h
a101e031723c055771c6a6186864a357 *src/samtools/bam_import.c
8d2f2c341bea6ba7b7e084f7e146125c *src/samtools/bam_index.c
3d182e57715cca7ebdd4748d3ac08cae *src/samtools/bam_sort.c
bd257862695fb9adc5e31f2e144289be *src/samtools/bgzf.c
e376e8bf01fea48bb5f169aa5df70558 *src/samtools/bgzf.h
cca296bfde636df363483321368c26f6 *src/samtools/faidx.c
060c5e036ec8bd44ec5e25549a1e160f *src/samtools/faidx.h
827428496eca8cc4aa8edd431e884f29 *src/samtools/khash.h
eba34f72610803cfb5fc09f4a8bf31b5 *src/samtools/kseq.h
eb1a139465f53530b6d8de5c781fedb2 *src/samtools/ksort.h
7fd7e5f5701b912345a4005add5076c1 *src/samtools/kstring.c
f42ecea12ac8c5e0efc76061a2fdf29d *src/samtools/kstring.h
1db8d745431381326bd4a4ce83b26e1c *src/samtools/razf.c
799bfb3cc0b3c7a25f84699588aa1d96 *src/samtools/razf.h
f9718d487a6cbcda29ca3286b6987b32 *src/samtools/sam.c
eb06482d20c8cbceead50f119c2a0229 *src/samtools/sam.h
752b4fd51d86c25f2cd01122f6f6371e *src/samtools/sam_header.c
8dd7c977d83077c0554fad6a1bb78043 *src/samtools/sam_header.h
