f063305f209df96fb1cfe088b712c1dc *DESCRIPTION
63ce1b2c15e62aa9ef749f8fa6997a63 *NAMESPACE
8f41acffe68735aa7449b5e66a9812b1 *R/add.everywhere.R
34423edfd64ed1b237c63a0364288bdf *R/add.random.R
17eb477b7b99dbdf228b0694b6ed01f4 *R/add.species.to.genus.R
f0df86c98d2fd0c6d76f49ca3172d129 *R/allFurcTrees.R
a6af1ca434dee085fa30425844755b7a *R/anc.Bayes.R
818a917d2bf47054c1f2782c5152d13d *R/anc.ML.R
4ea5611b8e0354bd06dabbc878dcd41a *R/anc.trend.R
f78777b0203972d9edf8deef4579d268 *R/ancThresh.R
a6e7c12432775c0db331677fb7161d07 *R/backbonePhylo.R
2b89c2213576296b322a09aa9c9e0dcb *R/bmPlot.R
0d03bcd21044ddeee058865f32156f3d *R/branching.diffusion.R
2ad5f3aa5021c7cc67269d6cb21e4ffd *R/brownie.lite.R
6c3bf1e39384f5e24d711ec7ac0d0a2c *R/brownieREML.R
74acc8fb9fc8ef0a0058d3a717c32eec *R/contMap.R
5e16af9b15459f15ef18a09c8ed44fb5 *R/densityMap.R
b707fc247b889daacea864a75e0915ed *R/drop.tip.simmap.R
bd862cef57b58a4221f0c761d4284d88 *R/estDiversity.R
0919b8e73cf8c0ed1c84a1033cc933a5 *R/evol.rate.mcmc.R
3d4680366f8b1b63b8a196f7372ca299 *R/evol.vcv.R
b645683560ce499323142e5bb8917e3e *R/evolvcv.lite.R
164c5aba763c4823fae1a2747cbbdde8 *R/exhaustiveMP.R
9894f4104c7750ce0613c2794262d447 *R/export.as.xml.R
00f15f78fbde52e68b39123e0b587a49 *R/fancyTree.R
b501eb99601bdc68adc0192b4face752 *R/fastAnc.R
de4661e9387e345e11ba6a96f6dfb690 *R/fastBM.R
0d3ae4cfb0e9fb73cf0cddc37d8d0fb7 *R/findMRCA.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
984fab2bf406a04876c19b8d4d6e4ec7 *R/fitDiversityModel.R
15de66d2a17e25275622e490e790cc40 *R/fitPagel.R
845b53ce3f60f6ed7d3728a67da0ecfc *R/getExtant.R
bddf4ca9c479faa597ea1561a265490b *R/locate.fossil.R
c8ded3505a547ba586b3ebffbba40343 *R/locate.yeti.R
b16b9534c1eb7d1757a070d7c58e5aaa *R/ltt.R
5a03095333cdc6926135e17a06b5718b *R/ltt95.R
429a79ff1742fc3a8f628d441df34710 *R/make.era.map.R
760853ff95d15d7b7fde7501c8e5d7dc *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
467b138389c02b0a6d8e42c8dd2da324 *R/map.to.singleton.R
bf6c23b046ed30ee9e9183582aceb070 *R/mcmcBM.R
659b234e9ff4b00daa511a06f72d53d2 *R/mcmcBM.full.R
9fc1c1054aa693a9ad32044d21e9f8c4 *R/mcmcLambda.R
b040e1eaf64ad302cdbbc1c0cb742cd7 *R/mrp.supertree.R
7e33687b42d9ee02d52ae36834f4c122 *R/multi.mantel.R
33b3968d9f4a82d3faaee75dae4ebdec *R/multiRF.R
af3ee4b2e3a749a9d0040ca6fceb40a5 *R/optim.phylo.ls.R
32cf021867e184c4d17912a931b8d2e5 *R/paintSubTree.R
e9e01ad2df33334424ddb0453603c336 *R/pbtree.R
0432d301015fb3848dbab54f3740d56e *R/pgls.Ives.R
b9458bd34ef5b251ce402cff9fc19446 *R/phenogram.R
4db055cf75d6a3d2e7cda5a91cafd137 *R/phyl.RMA.R
636d5d590f0c6a7cfafae4f13df2d57e *R/phyl.cca.R
067743180672ac2b90d1e160186fe0de *R/phyl.pairedttest.R
a3b5765e0818b44f0c88a0a99c96f7c4 *R/phyl.pca.R
6eb0e229b575c66b578eb9e3de320e4f *R/phyl.resid.R
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0f9c2a778d61d8ee221fe4a15b90a190 *R/phylo.to.map.R
529d2545bd8652c3d81807d26d3d2b4e *R/phylomorphospace.R
638b2bcf9fb53bfce31d4fb7a9c762d4 *R/phylomorphospace3d.R
7e17223f27118288d71aeff1f4843c44 *R/phylosig.R
6c356afe45b2d46b2f524a45a5594616 *R/plotBranchbyTrait.R
4717b16c8d2cff11e28d097e8967efa8 *R/plotSimmap.R
254f4528898de3982caf6d0048cbaab4 *R/plotTree.wBars.R
eb798ee8249519bd2afc6c132f24a065 *R/ratebystate.R
1c590708fed31ebaba52763d510f25bb *R/rateshift.R
434b44be7131677f2e66da3f62b3ecf1 *R/read.newick.R
b8b5ead91ff5bcfbbc89655e563d2431 *R/read.simmap.R
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54a7286b38ed9310390c726c151a25af *R/roundPhylogram.R
a734b9387333dc2d9a5ece1f8ee06f98 *R/sim.corrs.R
bdeb611db55ccb1b452c3392f27dffec *R/sim.history.R
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5ae6a2a091d203ecc04ad6081e11293d *R/skewers.R
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8340c2be787b0b7ac420ff68140d1267 *R/strahlerNumber.R
1aea81b3312d55001101b16c6f2b3c0b *R/threshBayes.R
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5acb8a5f0c9649f76024cccc9044b867 *R/utilities.R
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56aea5f39235e8e0b1b3281465563f93 *R/writeAncestors.R
c6d9cb0dbedb17c4cc0d4e16032da623 *R/writeNexus.R
93c8e79ef949a21de4bfe83d817c32fb *data/anoletree.rda
0eb3bef3466bd6d264c669571621c2d1 *inst/CITATION
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365eb2721ecfea859037a501a0901e27 *man/add.species.to.genus.Rd
ddbaa1f624e77bd0b5c8be0fb07b407a *man/allFurcTrees.Rd
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8526771ae97e991dd1f77c969cf07a28 *man/anc.ML.Rd
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e3e5266415d303b5e3be4454fc1ad814 *man/ancThresh.Rd
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5401106ec92900c68ed09e53a5b07d3c *man/applyBranchLengths.Rd
3e59cf4772028c0afc738956ca2d9d72 *man/ave.rates.Rd
38230327d5d0ee727bc04644267b59cc *man/bind.tip.Rd
3b398ccf81e2c56052d36e431c99e3b7 *man/bmPlot.Rd
e2bccb8b5027bdb760738851dc49fcbd *man/branching.diffusion.Rd
1a0b8180cf042d0bf526a0e3f58b5868 *man/brownie.lite.Rd
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ae79ca89b933d146417ee537eac5b32c *man/cladelabels.Rd
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8670786079dc39382e7380aa8d094b76 *man/contMap.Rd
1c53948802e8f694b01440e03a198dbb *man/countSimmap.Rd
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3fd9a42853666acc3eca0becbeb860dd *man/evol.vcv.Rd
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e93d92ff11f1f830540896a8129603e8 *man/exhaustiveMP.Rd
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24fbe29405d7d63b20381cbe63c3685f *man/export.as.xml.Rd
2c2e0b5f974dc15953a723dd5635b9a5 *man/fancyTree.Rd
5ef574839f1d09fd8011f7994142bbde *man/fastAnc.Rd
2009d1cf6841b0686643de9ac7c087e7 *man/fastBM.Rd
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ad9f96777ee3be6fc9fe09ea0bd50057 *man/fitPagel.Rd
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6ca10ad3d8ae7823a3ebebeaaa903a26 *man/getCladesofSize.Rd
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0f66e89c8d5de9f7906cfc629dbde129 *man/getExtant.Rd
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50941930ec6026a6fb9b0020a7e9e3e3 *man/getStates.Rd
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a09a3cd5616557bd09ba88e990addd40 *man/ls.tree.Rd
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b394835f519da73f8fd866dccaef03d0 *man/map.overlap.Rd
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7b63ed10331213eb811ecba82d6069c6 *man/matchNodes.Rd
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65087a43d13d28c223e6c45694898660 *man/midpoint.root.Rd
15d9083bbe0a7b7471e50151ea7653e9 *man/minRotate.Rd
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7a463045797019f708df846a42c1d887 *man/mrp.supertree.Rd
73a2a40506cc9e62da97a20c7e74a1b8 *man/multi.mantel.Rd
4d4c8e8e68c52b2579e894405b2b3700 *man/multiC.Rd
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a6565a9ef7e063ce60b930d196f13a4b *man/nodeHeights.Rd
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3d4ad8c725baace51058b5aec1e6a4a0 *man/orderMappedEdge.Rd
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4aec9a1fefe5f96ac6652a0e5fcc63eb *man/paste.tree.Rd
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1d69c86e95a461c0730689a304bef896 *man/pgls.Ives.Rd
9e7018e6d227b1ca84e2ac9547107960 *man/phenogram.Rd
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609bfaa749f8a6ef81a4559dd0033394 *man/phyl.cca.Rd
1b8c6cbd33b87917fb6dbbf17730376d *man/phyl.pairedttest.Rd
7ae77a5b6f0173fe0619be49403164d9 *man/phyl.pca.Rd
1ca0bfa0ac52441f921b34a080a25fb8 *man/phyl.resid.Rd
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415be9008226b2042bb574697283417c *man/phylANOVA.Rd
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c9f37b2f0f5fc62bede73242d27b47c1 *man/phylo.toBackbone.Rd
94a52fc7898901be93eaca98ee4a1f4a *man/phyloDesign.Rd
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1f76e92578b2f4d0ba684433afbeb6b1 *man/phylosig.Rd
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7abaec7aa366e41647df0bf3073a36ef *man/plotTree.Rd
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9c8297109561037f067dd7d469f12acb *man/posterior.evolrate.Rd
4bfa72a7ac47c3e185164f8c35dd5e13 *man/print.backbonePhylo.Rd
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6cc642b69b90cc39e37a97e90792dc0f *man/read.simmap.Rd
0a719edd23de05fb878911f9cf05367e *man/reorder.backbonePhylo.Rd
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3b056febcef2fb04f14e2f3c8ae29f28 *man/reroot.Rd
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81b95726f7c7c8b1308d35fc5a9e9d2e *man/writeNexus.Rd
