Package: RCPA
Type: Package
Title: Consensus Pathway Analysis
Version: 0.1.1
Authors@R: c(
    person(given = "Zeynab", family = "Maghsoudi", email = "zmaghsoudi@nevada.unr.edu", role = c("aut", "cre")),
    person(given = "Phi Hung", family = "Bya", role = c("aut")),
    person(given = "Tin", family = "Nguyen", role = c("fnd")))
Description: Consensus Pathway Analysis provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results.
    The package is wrapper of packages listed below.
    'Ritchie et al'. (2015) <doi:10.1093/nar/gkv007>.
    'Love et al'. (2014) <doi:10.1186/s13059-014-0550-8>.
    'Robinson et al'. (2010) <doi:10.1093/bioinformatics/btp616>.
    'Korotkevich et al'. (2016) <arxiv:10.1101/060012>.
    'Efron et al'. (2015) <https://CRAN.R-project.org/package=GSA>.
    'Gu, Z'. (2012) <https://CRAN.R-project.org/package=CePa>.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0), tidyr, dplyr, ggplot2, utils, stats
biocViews: Biobase, DESeq2, GEOquery, edgeR, limma, RCyjs, fgsea,
        BrowserViz, SummarizedExperiment, AnnotationDbi, ROntoTools
Imports: AnnotationDbi, SummarizedExperiment, BiocManager, Biobase,
        DESeq2, GEOquery, edgeR, limma, stringr, ggnewscale, ggrepel,
        graph, httr, rlang, ggpattern, scales, RobustRankAggreg
RoxygenNote: 7.2.3
Suggests: knitr, rmarkdown, markdown, testthat (>= 3.0.0), ROntoTools,
        RCyjs, fgsea, BrowserViz, GSA, CePa, meta, png, ggvenn, RCurl,
        XML, S4Vectors, devtools, hgu133plus2.db, org.Hs.eg.db, oligo
Config/testthat/edition: 3
Config/testthat/stop-on-test-error: false
BugReports: https://github.com/tinnlab/RCPA/issues
NeedsCompilation: no
Packaged: 2023-07-10 00:40:32 UTC; zmaghsoudi
Author: Zeynab Maghsoudi [aut, cre],
  Phi Hung Bya [aut],
  Tin Nguyen [fnd]
Maintainer: Zeynab Maghsoudi <zmaghsoudi@nevada.unr.edu>
Repository: CRAN
Date/Publication: 2023-07-13 21:30:11 UTC
