07d59f68e10c3ff321980a9e1dd2a0b4 *DESCRIPTION
25552ba8e920a4b71bb4e7c641f3099c *NAMESPACE
47a9a3e5011ee14e1da93ce36112ff3c *NEWS.md
cad5b8eaf44c00e8400ef12fbd79f048 *R/GSE74821.R
e0ef681901465d24f47f9139cb2c086a *R/NACHO-package.R
9b3fb32197dbfcb3fa3e5ce2a5f00dc0 *R/autoplot.R
3e9e59d6fcbb86115f8d2f9ba47bbebb *R/check_outliers.R
461c1b17215a9016add8a7acff6bedee *R/conflicts.R
68444fa97890384dfbf33f30184adfe3 *R/deploy.R
c0874ec0a57ced2ad24baea121751f7d *R/factor_calculation.R
85b5b2d6186da581e32f3775ea249ee2 *R/find_housekeeping.R
b648b5702c504228bd3fc266a7ce61a3 *R/format_counts.R
af544317b205f806c869117bf18789f5 *R/format_tag_content.R
0ad2b247bb6979dae899e5fcff9340fb *R/geometric_housekeeping.R
8e736bbbd0c20f1fea747363fa1151a9 *R/geometric_mean.R
c2961fe6f0d11d835a7d18dc32e8db50 *R/geometric_probes.R
38b96f6e7da38f544c51de64d3c93db7 *R/load_rcc.R
1805383c4e3e9f565888898e54554311 *R/norm_geo.R
17789c329a939226e62c6295fd241c93 *R/norm_glm.R
4daf92ac178a745becdf4fc35f4afb56 *R/normalise.R
63e13058402cbe656333e567030bc315 *R/normalise_counts.R
2d15e3ba93fe4890679a61b630d83d3c *R/print.R
ad196869abe537bf0222d90f0b638c26 *R/probe_exclusion.R
99b356e4ce094980ce281c5613258d78 *R/qc_features.R
9227a637d45e06eced46e9316e4115c7 *R/qc_imaging.R
ac19cd7c0737b02afd591976117e4c3f *R/qc_limit_detection.R
8584aad6290cb673b3b0dba78643a066 *R/qc_pca.R
60c87286f094b43de50f9fb7b07f4eff *R/qc_positive_control.R
374ca3ca6da20fd43bfe919c782fff19 *R/qc_rcc.R
802bd3f94f25e9e6a488af6c3e3ce0fa *R/read_rcc.R
857a49f2a89c987fd7f152f8f559f010 *R/read_tags.R
5ec95484a989bf23d8d407c6940c77cc *R/render.R
0aee7405c19e80f1f3bd4523972af63e *R/utils.R
8aa0d13ccf43d94676843450f98d31cb *R/visualise.R
f34d21f44cf1f43052ab5a76149eff13 *README.md
3e98b1bb191cab57980839d67c89aeee *build/vignette.rds
03ef0cdd06d55a486f934760ee81153c *data/GSE74821.rda
398ba36d3dd04866327aaebc91055e07 *inst/CITATION
d47e43019a08bda51bfe96c9382ea38f *inst/app/app.R
755984b37d2c4f41348d504cc1bcfde1 *inst/app/utils.R
795cccfa69667d5a1cedbf33ba965fd0 *inst/app/www/about-bd.md
70fbe7c023f125296c31dce515012b64 *inst/app/www/about-fov.md
0d1b97022ade4470722c57ec46244727 *inst/app/www/about-hgf.md
b1000e85bed302214f42e85b4fc80d90 *inst/app/www/about-lod.md
1fb0b04f2d089ebdcd044eef03414949 *inst/app/www/about-nacho.md
81cba43c315b8c403569477a5e29cf92 *inst/app/www/about-pcl.md
a9b6f5fe40151909e5a792f7b7832139 *inst/app/www/about-pf.md
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f5d3de996d21b3efb5ab0eed1c4bc7f0 *inst/app/www/united-bootstrap.min.css
458a89d0edc95ecfa8abc841b580cda1 *inst/doc/NACHO-analysis.R
3595ac430e9d29607a30197676fec476 *inst/doc/NACHO-analysis.Rmd
97175e1a4417be08de42be06122de526 *inst/doc/NACHO-analysis.html
ae9b9e0c552077f7c3bcc830adce8367 *inst/doc/NACHO.R
3f12b82029c8675a46ffd1771e3d9ec2 *inst/doc/NACHO.Rmd
e0dee6c727740dc7127e0cd52c3caee2 *inst/doc/NACHO.html
3c332caf05cb1b5d5f89ffddb0a3f4cb *man/GSE74821.Rd
7cb84d9cb31df94fea505175189109f4 *man/NACHO-package.Rd
dfa9d12c119c1fcb1f0dc67340a33b9f *man/autoplot.Rd
aa198d9ea200e0d30fa21b08635e5a2c *man/autoplot.nacho.Rd
25b16fc43b8bc170690096d3f88068e5 *man/check_outliers.Rd
f00c5a1387f2d50c8cac797a39ae7b05 *man/deploy.Rd
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372d446bfd5579e8cd41e1cf95b1fd70 *man/figures/README-visualise.png
18964f2b3f6eb33bbd0afed7a8341320 *man/figures/app_screenshot.R
4e7c88d9934a42c3be82f4f5342eea48 *man/figures/nacho_hex.png
ebfc133edb67d9aec83f097d74f044e0 *man/load_rcc.Rd
df0366846a48bbc6d9e52be92984b096 *man/nacho_conflicts.Rd
97dc86cc347271bb796dadcb3f85e2cf *man/normalise.Rd
41f6af0e961bebe03089ee84018f3394 *man/pipe.Rd
3de82063610e65bb855b5664f55efd5d *man/print.nacho.Rd
216b1dc061b39b88f8e0da55c0dec03c *man/render.Rd
96766678f53685381bea55043376fa02 *man/tidyeval.Rd
2727d84694aa6d17a80e6b97d216bec2 *man/visualise.Rd
c63a081e6f2c3da484fdf0e65f6ebb8b *tests/testthat.R
2e3c03d7409d11bb6f6edff3ca792742 *tests/testthat/plexset_data/plexset_01_01.RCC
2716060acbaf11d72d90f6db358a6ed4 *tests/testthat/plexset_data/plexset_02_02.RCC
4c3321d0327d748220f74055705f04b8 *tests/testthat/plexset_data/plexset_03_03.RCC
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4b2c08357bb7de8e07cd96ad5674ad4d *tests/testthat/plexset_data/plexset_06_06.RCC
1f8c0557fdb1705b3d446b81154d4007 *tests/testthat/plexset_data/plexset_07_07.RCC
c8227c16984891054d75faa6d48edeb4 *tests/testthat/plexset_data/plexset_08_08.RCC
fadfbf76ed229e4eb7c01a882a672ea8 *tests/testthat/plexset_data/plexset_09_09.RCC
4544f7cd4dd760bf8ffbc931133c018d *tests/testthat/plexset_data/plexset_10_10.RCC
1383357065dfec8fdf040ee39bfefe2a *tests/testthat/plexset_data/plexset_11_11.RCC
86c4c1ffb53f853688121d8269dce989 *tests/testthat/plexset_data/plexset_12_12.RCC
70122b5e79e2f71bd90cbeb2b84a2676 *tests/testthat/salmon_data/salmon_01_01.RCC
3981b3c7f060e0f6e06e21ccc4ea15c9 *tests/testthat/salmon_data/salmon_02_02.RCC
52b9f8b01777e6b38e986702461e3386 *tests/testthat/salmon_data/salmon_03_03.RCC
076926663bf0df0d1216af4ced03a079 *tests/testthat/salmon_data/salmon_04_04.RCC
fd65e8611a46e5cbf9d44864577f2ea2 *tests/testthat/salmon_data/salmon_05_05.RCC
89700089e1db58597177592be82ff4fc *tests/testthat/salmon_data/salmon_06_06.RCC
99bbc78596adcfa7f98ce4a531535747 *tests/testthat/salmon_data/salmon_07_07.RCC
390ca3a58c892bffb0c4042c0aa9d3ba *tests/testthat/salmon_data/salmon_08_08.RCC
71fe6e379116d4de969d3e87f7b5a9ee *tests/testthat/salmon_data/salmon_09_09.RCC
067ca24441be5d043818df426c012b26 *tests/testthat/salmon_data/salmon_10_10.RCC
40974e10fc407a6f7d937a7c62bb5339 *tests/testthat/salmon_data/salmon_11_11.RCC
b207567c62f3b3e20cfa137dd4cfe354 *tests/testthat/salmon_data/salmon_12_12.RCC
ef64e320235ed7ebe091d2350e42b883 *tests/testthat/test-autoplot.R
cfe6bd9107ce83867388a5f77217819d *tests/testthat/test-check_outliers.R
31b01a031c859edfebd85482544fb801 *tests/testthat/test-conflicts.R
a19606148612db9660dbb5f6ac11994b *tests/testthat/test-deploy.R
9f1a567048e55dc1355a32a5a1a66448 *tests/testthat/test-load_rcc.R
ffdc59d48007e321647e0ac45557147e *tests/testthat/test-normalise.R
24c64df8ad2a84d0c28cdfafc710d967 *tests/testthat/test-print.R
4f150ad3f0ef4a2feaba25f265c55628 *tests/testthat/test-render.R
be9c503e2ba0c7124852f620b58877a1 *tests/testthat/test-visualise.R
3595ac430e9d29607a30197676fec476 *vignettes/NACHO-analysis.Rmd
3f12b82029c8675a46ffd1771e3d9ec2 *vignettes/NACHO.Rmd
defb5940ffeb26b2565b71d93861314e *vignettes/README-app.png
372d446bfd5579e8cd41e1cf95b1fd70 *vignettes/README-visualise.png
3c1eed7ad08d5552c80753c58556a315 *vignettes/nacho.bib
2a469db1311a22519d38d9a0fe15c046 *vignettes/nacho_hex.png
