445f6635ef9ecba7faf7df29485094aa *DESCRIPTION
bfaf20f8981841ee7365d4cc71476698 *NAMESPACE
1042afe7349a9c896b074bae46ae8691 *NEWS.md
24b43635ca805777be6c5da6c50d550f *R/Imperial-model-params.R
12e234daa44b9f9889f4e9ed9b09a01d *R/Imperial-ode.R
e461bc6ba204f675788ad84029c10265 *R/PN-auxiliary.R
fde83413aa383c07f5be5175b3fa0e23 *R/PN-epi-node-decoupled-P.R
57757c439830de51b362e4ae210e0168 *R/PN-epi-node-decoupled-T.R
cbd1283e48a1e5286722d168670418ca *R/PN-epiSEIR-network-P.R
1a0cf1219b2fc1ac9559b831970cdf86 *R/PN-epiSEIR-network-T.R
a234ca7143b1ca77aec1bd9d5ae138c4 *R/PN-epiSEIR-node-P.R
56e84c8a2685b74765b95de7b4c95ed7 *R/PN-epiSEIR-node-T.R
68958ddd57d6601cfdeb2586d63cae8c *R/PN-epiSIS-network-P.R
3798633197c175b4bcef5965b032cfc7 *R/PN-epiSIS-network-T.R
86355154fbf618bb1fae075b623f8b91 *R/PN-epiSIS-node-P.R
30d7021048567167de0f4163752cfba4 *R/PN-epiSIS-node-T.R
01de0bb863fe46740b8923f9d0ac0e8b *R/PN-lifecycle-network-P.R
9c35ad4e3f0626871779003f637c7db3 *R/PN-lifecycle-network-T.R
f570b8d43beaa716191384c285a82c9e *R/PN-lifecycle-node-P.R
11aa8a47a91a6d5a5ef18b861ef4dd77 *R/PN-lifecycle-node-T.R
72dbb6a5b0a68708944d4cfed88fc3a0 *R/PN-matrix.R
e806dc1012a10c954c07c09b3c0ed408 *R/auxiliary-analysis.R
c1099bfc8a92c989101ad4a55c657fe2 *R/auxiliary-batch.R
2d5b221a6082f98c994c43686b76d958 *R/auxiliary-internal.R
d7416c9d83a8e96b64562168f0e8188e *R/auxiliary-plot.R
dab6f0059e8495891460b1e4e545c548 *R/auxiliary-tracking.R
b60ae8803a8a0a25407a546eb55efdc2 *R/data.R
9009a9b0b71d1682e62abdab26e03c74 *R/equilibrium-auxiliary.R
97a87918a76036557d910699d3441da5 *R/equilibrium-epi-decoupled.R
c42ba4b9b9f35dec4274feec24a5ef09 *R/equilibrium-epiImperial.R
5746d0e3b215c8711552b44f19977eb0 *R/equilibrium-epiSEIR.R
c21561deca7ae56844df7cd0d4e23ace *R/equilibrium-epiSIS.R
e51ddf088b2deacdff5cc4d8c1fb5196 *R/equilibrium-lifecycle.R
8910bf8f12476439bb6bc39864834fcd *R/hazard-auxiliary.R
4e73146a576c1b35d7e5f7fcc797c0f1 *R/hazard-functions-human.R
87fe4fb276cb0fa85976bc0401dbbf17 *R/hazard-functions-mosy.R
bd9d2c686c5395904b1a61fc8130f6c6 *R/hazard-main-decoupled.R
0b58e98f541d1dfcd7be5a7376fd83f4 *R/hazard-main.R
055f3f5d8ee1e4a71fc6c0a5ac5083dd *R/human-SIS-ode-decoupled.R
14912eb8b66a183db30db463cacb7f65 *R/interventions.R
cd764de5d5b7003967846bfc77f48e28 *R/sampling-CLE.R
14c61fa88cb74869fa34593c2d57e7b1 *R/sampling-DM.R
2939796334991db084ab1f8f713bace3 *R/sampling-ODE.R
95807f8b006b355f06d23fdecc21c64f *R/sampling-PTS-decoupled.R
fd2154833a9157ce5800b0f561dcdf20 *R/sampling-PTS.R
1a208147d2f28fa2b92624fe1dc85ffc *R/sampling-trajectory-CSV.R
16bc517a0ed50f7de40e2ca26405a0eb *R/sampling-trajectory-R-decoupled.R
b1f79063d968b6e0f8921191450581c5 *R/sampling-trajectory-R.R
b65cf1e488e7f8cfa241538d3f9c61f3 *R/sampling-trajectory-decoupled-CSV.R
19e89eab23f01904e0ffef86006b98fe *R/zzz.R
251af50a1f36c3524dbc4cfd253b5718 *README.md
55ca8b4efe3619a1d83921d0372a1ec0 *build/vignette.rds
a99c264bdc998d3878512a9e46b4c3c1 *data/mu_ts.rda
09da6eb797cafb443e75bc0b17d0f025 *inst/doc/advanced_topics.R
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255d04b71a1df1e0287504ab89902dbc *inst/doc/advanced_topics.html
aa1e2abbe2068bd280b9f126eb02cf3b *inst/doc/epi-SEIR.R
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505df2916a7b1c5e50cad0908706e7db *inst/doc/epi-SEIR.html
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ccba6b3dc4e20e61098ac5f1f347cd5a *inst/doc/epi-node-Imperial-decoupled.R
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be0abda7dfa9edadb101af6c909a0d9e *inst/doc/inhomogeneous.R
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86a8a0c709b2c605457d4495b8ab8fef *inst/doc/lifecycle-network.R
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55863e99cc7e31995c1d1d850b73a38e *inst/doc/lifecycle-node.html
4404eb833bd32c81f672444be99f9f09 *man/add_interventions.Rd
6ce082330694276fc13e400e368c1dd1 *man/base_MQ.Rd
512cf50a29a3326a1a691462e9629307 *man/base_MUH.Rd
00458df7183bac0f3a420e286b850522 *man/base_aquatic_geno.Rd
fd193f554e64176018a6c988d970113f *man/base_aquatic_stage.Rd
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b4f9db3fa9b8e6579c4c0f84b50b6427 *man/base_erlang_F.Rd
8418000f9db67edc729ea699d6873ca5 *man/base_gen.Rd
80e77d4b193279209141487a31f8dab9 *man/base_gen_FE.Rd
7107724855f04ba66881582e54ea0f6e *man/base_sum_F.Rd
5867c3dd591dab6dff6e638d730461b9 *man/base_summarize_humans.Rd
bbde780c066a27d3e0cd09621b0156f0 *man/batch_migration.Rd
52ea59e947865efef8a39a836139b109 *man/batch_migration_stage.Rd
30b5a7ab5c214e77bbb38a096f3eba11 *man/calc_move_rate.Rd
2661ccb834cc5335009ccc49761f8b44 *man/convert_prevalence_to_eir.Rd
0712486843f36e206f1c9879987a8ac0 *man/equilibrium_Imperial_decoupled.Rd
8d7f2a1f753490e654e85b10ddb72d22 *man/equilibrium_Imperial_decoupled_human.Rd
ba785bc714dd12d1a445e08755d5942f *man/equilibrium_SEI_Imperial.Rd
6b19391998d621dac571b74f2a089010 *man/equilibrium_SEI_SEIR.Rd
e1d241c88fae106454d2213bc9915f63 *man/equilibrium_SEI_SIS.Rd
7b01e9b8fa87adca5c71a2d13d0fb92f *man/equilibrium_SEI_decoupled_human.Rd
4e3a68ec7e6434ae0d809219bed22733 *man/equilibrium_SEI_decoupled_mosy.Rd
4566c99b2fe00d4b9ff055f184d5247c *man/equilibrium_lifeycle.Rd
6095cce5e0e2cac2c11a1703ff674c65 *man/get_shape.Rd
2a3a72daf34cd8741f4e779476ed73c7 *man/human_Imperial_ODE.Rd
0ba119df0796171f525b69da7b0a6791 *man/imperial_model_param_list_create.Rd
9034dddb551a9013c27cde1c5f5c1968 *man/make_Q_Imperial.Rd
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52d159a74e5bb3fb312e8c7949e67705 *man/movement_prob2rate.Rd
cbbd9b81407e830499117bde4091dbf9 *man/mu_ts.Rd
2665829922e1eb53c90d7b3bfb720c68 *man/sim_trajectory_CSV.Rd
7f3e06a1d1b2abc9b0bcfc8fe0e1074f *man/sim_trajectory_CSV_decoupled.Rd
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d7636d8891147b60b68efa198e16defc *man/sim_trajectory_base_CSV.Rd
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23c8e2d607349240827e8a129f673238 *man/sim_trajectory_base_R_decoupled_SIS.Rd
4b40683a593866e0a0d34d7fba73b6fb *man/solve_muAqua.Rd
bacf9bb675844ceb08ccf886247baddc *man/split_aggregate_CSV.Rd
375c0da6cd6f932f00bbd08e6f3894d5 *man/split_aggregate_CSV_decoupled.Rd
38087c2eb231b566e49f4466e600a901 *man/spn_P_epiSEIR_network.Rd
e5fd282e323c5c2b5483acbf18f887a5 *man/spn_P_epiSEIR_node.Rd
988201caa7ec619b123e875884bda52d *man/spn_P_epiSIS_network.Rd
3e604a907de5e10174e82cfe54f3f667 *man/spn_P_epiSIS_node.Rd
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669477b909ccd8ae5bcaa0e71d7e4840 *man/spn_P_lifecycle_network.Rd
9697a7a1f5854a6d089be88bda702826 *man/spn_P_lifecycle_node.Rd
cc2a16314f28b3beaea34a955191b5d6 *man/spn_Post.Rd
593b6f110c20e2cb08a164adffe10e56 *man/spn_Pre.Rd
90eb1722ff73c4d781884bad62a73681 *man/spn_S.Rd
1e6c3cf234f4cc83dd7ff8382979ce4f *man/spn_T_epiSEIR_network.Rd
8f87b4b6143944a6f4631e108a3745de *man/spn_T_epiSEIR_node.Rd
84087b6a89dce7cc772b08adcd9004a2 *man/spn_T_epiSIS_network.Rd
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f8ee8c1445217fb937c6bb8a3e0d97e4 *man/spn_T_lifecycle_node.Rd
55b897375881ba35ec39d843691539c0 *man/spn_hazards.Rd
907a40d5d1c70287f717659441c95624 *man/spn_hazards_decoupled.Rd
2292b273c33571147c972a0d6e86759e *man/step_CLE.Rd
b4c6fa4bf838e4c1f709d9e9ec01ea33 *man/step_DM.Rd
bc3665dc082e78d98b132fa00a3344a1 *man/step_ODE.Rd
c3d6f65b8f98a10d5be7d3159b5a77fd *man/step_ODE_decoupled.Rd
0fea33736f8ba2d041323cafb4c1a3b5 *man/step_PTS.Rd
8062407a8cdeb662ca3c3204912db169 *man/step_PTS_decoupled.Rd
f1bdf3e1d6e581adfc06c9eb78c5a4e7 *man/summarize_eggs_geno.Rd
317301ec40740b3566fe9d0f58c4777d *man/summarize_eggs_stage.Rd
1f6f744b98fc77120be34d1350ff72b0 *man/summarize_females.Rd
ae69a41612ee5445f4b73edbd788a7be *man/summarize_females_epi.Rd
a22c2ae1a0e29b2d692712ae0c28a948 *man/summarize_humans_epiImperial.Rd
c5f6c5265993124265fd409d16b84bbc *man/summarize_humans_epiSEIR.Rd
8bca9ac86a9d00294bf6441d30ef445d *man/summarize_humans_epiSIS.Rd
6382480c90ff1ccb8ae7d2cd6b06d5d1 *man/summarize_larvae_geno.Rd
347668283b5f30236e2134377164446e *man/summarize_larvae_stage.Rd
3c81d94ad05905a433eeae473d24604f *man/summarize_males.Rd
a7558c20eae362a7f36419b6a23ad157 *man/summarize_pupae_geno.Rd
5afa25340cf4e6d23b30ca3d0955dcd7 *man/summarize_pupae_stage.Rd
589fdf34ca5cd8fadcd27309409bec48 *man/summarize_stats_CSV.Rd
fc9587411d2c8ad5fc91fc1fcf82b049 *man/summarize_stats_CSV_decoupled.Rd
7bf825679bbb1afd0f9f3a658a112a01 *man/track_hinf.Rd
c992f11783acc31e663cbb86bb922637 *vignettes/advanced_topics.Rmd
c9b52e4e2960567d33a92732ca9e6e34 *vignettes/epi-SEIR.Rmd
b24c0cb7ccf19e344829b72788036b6f *vignettes/epi-network.Rmd
6bb118bfaf11437e981c4ef69eca91e5 *vignettes/epi-node-Imperial-decoupled.Rmd
924b79f5d73fb2a6f48619ae68f387e2 *vignettes/epi-node-SIS-decoupled.Rmd
302ce5967245f7a3a6ecb747b5b496e2 *vignettes/epi-node.Rmd
2ccd2156a1f55ff07f66e669e3550a02 *vignettes/inhomogeneous.Rmd
699e7aa10c35708f47cd420b59c122f3 *vignettes/lifecycle-network.Rmd
33160bb4b6902d4e03ed022ea06e7984 *vignettes/lifecycle-node.Rmd
