ed943602000672a0a0be5f734f391f61 *DESCRIPTION
b7b9ab240b832a192a34ec40a3001531 *NAMESPACE
698fd9f4031293cd2f229e07fdd9a34d *R/ICAMS.R
4d7e65d6b842d8635cffc05c1cc670ae *R/INDELS_related_functions.R
25fbfcb20ff4d3d987fb9cf517ae25c4 *R/VCF_to_catalog_functions.R
375ad5ee3c32c4e21690c93eb2cb1f2f *R/data.R
090a84c3cc77e88f863b196a10868b99 *R/other_catalog_formats.R
a4969768b568aeb9eff4ab4512b54c8f *R/plot.R
eac338d633d7066880ac3212ae256b09 *R/read_write_catalog.R
4b99c5829ead055a232ae6ed5af94b88 *R/sequence_context_functions.R
7d0b360f5784f696a20c777e3bcbb9b1 *R/sysdata.rda
8555a457ea92d02df77895de64cf6bc7 *R/test_functions.R
a5ff01b889d0440b8398413336c0a747 *R/utility_functions.R
e61af6953ddfb1eff0d241f481d46fba *README.md
d82dec73c0f77b1311cb2eb6c83b51ea *data/all.abundance.rda
ab5e5d243ec967b2fd2009af78b56892 *data/catalog.row.order.rda
5822366fd64834a6fa75c459c04183fa *data/trans.ranges.GRCh37.rda
4ba998d741b5735238ec636b63839ee0 *data/trans.ranges.GRCh38.rda
c1800d948b7eac0df2836a946cc6f167 *data/trans.ranges.GRCm38.rda
6b1d433e8dbcf72cd6676b2e1b741205 *inst/WORDLIST
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ab08055f2269c91cdb7d3638fcd9c049 *inst/extdata/Strelka.ID.GRCh37.vcf
20fd81b0e6ccc6ed894507e79faf917b *inst/extdata/Strelka.SBS.GRCh37.vcf
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4fdcdd79f6831d96182de270e1448eb0 *inst/extdata/mutect.regress.cat.sbs.96.csv
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cd544b05a7011dc9f81e9ef1286ff24b *inst/extdata/strelka.regress.cat.dbs.78.csv
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81693d82934a743332d1aa3ab0b7b292 *inst/extdata/strelka.regress.cat.sbs.96.csv
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4211646f3722df95a0099f5ffdf73171 *man/AddTranscript.Rd
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74b8ea7fd714aab9115cbc62f9241716 *man/Canonicalize1INS.Rd
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431ba92ab953b7d0bf7aad74ade53bb9 *man/CollapseCatalog.Rd
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82e4043e11eac8e2fa27256c53d0b35a *man/CreateExomeStrandedRanges.Rd
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4ac02bc86bf77333affcded526354816 *man/CreateOneColSBSMatrix.Rd
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3d27568788d58c775b1e8923397cd3b6 *man/PlotPPMToPdf.Rd
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6f03bb80723c4d177d59dfc2fb004d3f *man/ReadCatalog.Rd
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7aa1cdc4a6ffaad406498db31debe63d *man/ReadMutectVCF.Rd
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fefa5788fd86d08a0849bf1b6fcd4e04 *man/ReadStapleGT96SBS.Rd
675dfee650f5feec2554683ec42d67ef *man/ReadStrelkaIDVCF.Rd
1220775201525ccf29b46dff2dc4c705 *man/ReadStrelkaIDVCFs.Rd
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190004f295c9a1d12daf973fdbfd3874 *man/ReadStrelkaSBSVCFs.Rd
ddc3d72c2e6500992164e5ae3c44a42a *man/ReadTranscriptRanges.Rd
64cb79fb4f17e1cf380e1a77f7742bb6 *man/RemoveRangesOnBothStrand.Rd
9a311438f03c3b6115bfabafa4cdde46 *man/RevcDBS144.Rd
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