35c85bf4977d0bbf2452e2ad359853cd *DESCRIPTION
e9f684d51c7af2c2099f64726655b44f *NAMESPACE
ab2562b96ea1f43d91daf485647b578d *NEWS.md
ff469ea92748ef0aaf9d762956833df1 *R/GPAV.R
7fd99ac4bf9870facc7dc98ffc175f49 *R/HEMDAG-defunct.R
9235bd89d3b4d37fb111da2be30cd422 *R/IO.fun.R
981bbda5204f8676ca7c3413ef3a8a0b *R/TPR-DAG.R
3cbab5250f7079516a95900cee5198ed *R/graph.utility.R
20f49e501426285ea307c6410c650a79 *R/heuristic.methods.R
e2e3ad94ae0dda7b9eb185bbfe3e7611 *R/htd.R
2ac0c2f94bb78976dcce0799568f2661 *R/norm.fun.R
e9b08f930371af4995095a7aaf67783f *R/perf.meas.R
309dc136f7f74ca4129233e5a08cf6bf *R/pkg.attach.R
91b5763af962689a2b11b265b7777947 *R/pkg.import.R
43328fa551e8065e4d3c5da2b6e55ec0 *data/graph.rda
29f9d7a6477e2472d64779231a2c867e *data/labels.rda
b38c67e9118b338a34a4f67284fed863 *data/scores.rda
8a1a6c2671b3af583bf39bc32c10698d *data/test.index.rda
a6784be6fba1850db1a693ecd6b44e17 *data/wadj.rda
231deecd6cdc3aaf9c031bcf8e8ee443 *inst/CITATION
be370353e18fd52d0f4836a4921f7b7c *inst/HEMDAG_2.3.6.pdf
c37989d9385b1fff8267bd23b6606437 *inst/extdata/edges.txt.gz
55a435228950407cb06aed1a96defd28 *inst/extdata/gene2pheno.txt.gz
5d5105e3f14e98178c3586e12283d442 *inst/extdata/graph.edges.txt.gz
0d8acf2ffce1e655c47fd054eba56d8b *man/AUPRC.Rd
baa27b9ede7b7f1e5b77306b86770d31 *man/AUROC.Rd
b19c67d37c36a5f6b53007615724307b *man/Do.GPAV.Rd
62be045964f5509ab921dabb281ee594 *man/Do.GPAV.holdout.Rd
316bb1f221121099a65f289cd243993e *man/Do.HTD.Rd
179e96ad5790707bfe597d4936bd9e0a *man/Do.HTD.holdout.Rd
6adb133b7f1129f7889314fc46d7d629 *man/Do.flat.scores.normalization.Rd
8c90d6fc35c1af1d289d8702e5cb4bf4 *man/Do.full.annotation.matrix.Rd
72dfce43fc087f14ca387729b0b0f8f2 *man/Do.heuristic.methods.Rd
4230dfe8fe19404d3c56307f4626caf7 *man/Do.heuristic.methods.holdout.Rd
b015e8d5de06f81db0b5fec1be790abe *man/FMM.Rd
2a8373f0d8f8e724010252df07558c2e *man/GPAV.Rd
35c0ff8e912b1390379f1e3ace9df1cc *man/GPAV.over.examples.Rd
8d66ecd3805091f357dd2e0a8cb6d984 *man/GPAV.parallel.Rd
d40dfe3dea138e68608210a4398e6971 *man/HEMDAG-defunct.Rd
e9f13387e7ca32018ef8767475fa7674 *man/HEMDAG-package.Rd
4351a9e4a67536244ebfd00a54adc821 *man/HTD-DAG.Rd
a777be169a472c896076edad9bc93bd9 *man/Heuristic-Methods.Rd
41dde6870c55b36665b763411d252bcc *man/Multilabel.F.measure.Rd
a3d8aad22180f53253770f157986c089 *man/PXR.Rd
a7d5849b7f5adbff717bca13628e3cbb *man/TPR-DAG-cross-validation.Rd
cf0976f96f5764c324da461586403e34 *man/TPR-DAG-holdout.Rd
90b5c322afa409fa0815d1029032c377 *man/TPR-DAG-variants.Rd
d357754479d6d79181e8063f998b0cc0 *man/adj.upper.tri.Rd
af34f87668ac08607cc092b54e4dab98 *man/ancestors.Rd
dfa3fd6c86ca5fcfc91244624c44ca32 *man/check.DAG.integrity.Rd
6ce05fb93b64ac877082884b4dfc98bf *man/check.annotation.matrix.integrity.Rd
08a9aa62e91a985354bfea3c1d151b7c *man/children.Rd
f3213dbdf1ff0565894636378cc83519 *man/compute.flipped.graph.Rd
cdac15f4d63925eab4d1658d584c1253 *man/constraints.matrix.Rd
6e9382de8fed1477941a7105279762d9 *man/create.stratified.fold.df.Rd
fc5307cf7e6bbbb470670432abb78e5f *man/descendants.Rd
e0a738bc30fb8f5b6dd22ee3543f32dd *man/distances.from.leaves.Rd
342ff99edca44819718a99de13867c50 *man/do.edges.from.HPO.obo.Rd
056fe25433637b35ad670a2a28c727e4 *man/do.subgraph.Rd
19946bda7c59f6b7616e3a047f973215 *man/do.submatrix.Rd
79930d34ffd9f98087157c6db4e08cec *man/do.unstratified.cv.data.Rd
e6f026e71f9ea5506dd72a42a215a59a *man/example.datasets.Rd
549a1fffd2094d192a957fa459c4455d *man/find.best.f.Rd
12636996849865bc94c66bdae8ad7d7c *man/find.leaves.Rd
9a39746dad432cecf19753d2ea6380a0 *man/full.annotation.matrix.Rd
d3bcd5da0caaeda901a29c89fdf3c26c *man/graph.levels.Rd
f7dfdb2929085b4fe4e44ebb002b0383 *man/hierarchical.checkers.Rd
7246f45c3b5d7daca4edfee491d918cf *man/lexicographical.topological.sort.Rd
b9b524db72b7f31f0a757a19e80b4b40 *man/normalize.max.Rd
8e6581230f6ab5630eedeb80cc5533b4 *man/parents.Rd
cbead6db200f34429828080503279782 *man/read.graph.Rd
6905768282b9b3951b89a5a8d40c6a44 *man/read.undirected.graph.Rd
530050888bb31560f7d4d3a310897866 *man/root.node.Rd
7711dc329db53f2f5dda4699d737e218 *man/scores.normalization.Rd
67390fe2443467043d730aafcf0bdca7 *man/specific.annotation.list.Rd
b64368dadfdc8619455781ece39152fe *man/specific.annotation.matrix.Rd
94fcc90564360cb580f4609870f5cf25 *man/stratified.cross.validation.Rd
e578670bf744ba38ca32e19d16f1b56e *man/transitive.closure.annotations.Rd
ef8497b81bba13ab41ea5eb374171ffe *man/tupla.matrix.Rd
938b775629019bb7b5876e9df62c9706 *man/weighted.adjacency.matrix.Rd
de7edafcddf8688a99fff6b6b8f33b75 *man/write.graph.Rd
84f38b1089b93100c6d9fa61ba539f84 *src/GPAV.cpp
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
a02ba382db6b024cb986998db299dd7a *src/registerDynamicSymbol.c
