0776314ade71e52530a927a9622786ec *DESCRIPTION
f62c5b92b44150690faecde8b254d29a *NAMESPACE
810bc44fe33716717f921164ce1df8d9 *NEWS
e154bfc0f50fea35c2e225c1a940e1d3 *R/CrossValidationControl.R
5f7a88c777ac1e47d7680d4e7f428e63 *R/DataManagement.R
45e49125b00bc49afd7718abe2a6acaa *R/ExampleData.R
df3a46173a19c793f16e278d695ae39e *R/LegacyDataConversion.R
043e39100518df0807cf9e6fa6162a58 *R/ModelFit.R
60ca5cb8e92f940d36463587bb35a127 *R/Multitype.R
8d0b05f421481e98c80b165ce3170223 *R/NewDataConversion.R
a777bc2f6acf26d8250ba3479df884d4 *R/PackageMaintenance.R
31305442425eb559dced4c1e33e74cf8 *R/ParameterizedPrior.R
381c6a52f619809534539dfe5aaf2bac *R/Predict.R
da54f0fc9f87326a50def0c573f36707 *R/RcppExports.R
f6a6d1d23eea398e450c63fd785dcfba *R/Simulation.R
2013626eaf710f3329b22c837e5eda55 *R/Survfit.R
037bee8255ffc22cedbc3a8a49e7cef5 *R/cyclops.R
edf60039bf27f8ef0dcd4f7da56efda3 *README.md
97359edf34b53a80b1b890aee97bb88a *data/oxford.rda
486ad7931a4cb183f491056c91677af9 *inst/CITATION
f1caf535980b19c472e2969be5c7e565 *inst/NEWS.Rd
753808a2c8e308b2799fd4a37616dd19 *inst/extdata/CCD_LOGISTIC_TEST_17var.txt
4a383b610893ac9ef9d35738233ecaa0 *inst/extdata/cpr_test.RData
fb36d50ec38c3d48f059777bf2240cd3 *inst/extdata/infert_ccd.txt
4f59d5272f74ab7b1b78312887b41ac7 *inst/extdata/test1-clr.txt
30ff8d27a506a036cec7b2d62c6bf4c1 *man/Multitype.Rd
ab6445aad9d98e8ec09b7fdfef5e51eb *man/aconfint.Rd
7e8a5eb671c8fa15d7cbd5e7e160dd24 *man/appendSqlCyclopsData.Rd
e35a3d72851d53bd32d5d0166f0940fd *man/coef.cyclopsFit.Rd
d765018de26ca627723c11b5d5adea3c *man/confint.cyclopsFit.Rd
3ae8a97991b04af4bbba5d444dcb3e82 *man/convertToCyclopsData.Rd
c882a425b69f20c871d6f50b25b4930c *man/convertToCyclopsVariance.Rd
8550027f808c1243c49571394973d00e *man/convertToGlmnetLambda.Rd
f9881b5cb9280be5b6e080d9db763567 *man/coverage.Rd
a2f75c13b216c3491e63ef8127ef8eaa *man/createAutoGridCrossValidationControl.Rd
0926bdc5a65d44337fc56a9c80732d50 *man/createControl.Rd
2983e9b0dfa282df84d0f1770d4159d0 *man/createCyclopsData.Rd
86ea3d4bb535e54d26bce6eca924cfed *man/createParameterizedPrior.Rd
01cf51194cb2f5ede25315b613ea341a *man/createPrior.Rd
46624ef82d904db68b2a51293b7de7d8 *man/cyclops.Rd
67b0c74dfa261113511140edbcfcdbe8 *man/finalizeSqlCyclopsData.Rd
e407bf06614f760ec62eec138caef878 *man/fitCyclopsModel.Rd
8b124d3f62454b58534792e4b268868e *man/fitCyclopsSimulation.Rd
5a9398b35aa666b6b1c5315188f70ffe *man/getCovariateIds.Rd
e7a8178da8966385cd28b75b5c670f4e *man/getCovariateTypes.Rd
6236e8fc9c325eb0538c908c6358e684 *man/getCrossValidationInfo.Rd
a24cf62db85143b72ea30be3e4236f04 *man/getCyclopsPredictiveLogLikelihood.Rd
ff8b7e701ae0a8ebfc54186d30cb6da8 *man/getHyperParameter.Rd
506a63cfd0cb872da29c842aa29867ec *man/getNumberOfCovariates.Rd
392fc06e8d066914bd2b699c25fa5a40 *man/getNumberOfRows.Rd
080f5c8f6c9cd07758b1d9f7a846b6bf *man/getNumberOfStrata.Rd
3137b59bb63154ba9337bea4c6ba754c *man/getNumberOfTypes.Rd
83db6410d46b1adc16d630e9201ffe3d *man/getSEs.Rd
06132ae9b790d68e116c4d9f1ada2b54 *man/getUnivariableCorrelation.Rd
90ab5c18ec8125b194c45210eb18dd50 *man/isInitialized.Rd
79040d9ea6f9de6b05d4c3809a96bb2a *man/isSorted.Rd
2a3aba82b98144e8f4ef573992e4d4af *man/logLik.cyclopsFit.Rd
eca0d373429e45865acb3c6ae68823b6 *man/meanLinearPredictor.Rd
fb0c93f8879275f1fb2011a0c4e3ea31 *man/mse.Rd
4f2250a39279d6cf4577e314b9140461 *man/oxford.Rd
314c53c30ccb1a187e169221d156f80d *man/plotCyclopsSimulationFit.Rd
85266d5ccefbb45c33c677e6c5ba8982 *man/predict.cyclopsFit.Rd
74ed455e478894c72c2eb49a5a1b2521 *man/print.cyclopsData.Rd
1381e22c4e4302fee3c545e192557d78 *man/print.cyclopsFit.Rd
258c126b12ec0db128f40382eb975dbe *man/printCyclopsRowIds.Rd
5cde3c469b999e64fc520aacba4867b0 *man/printMatrixMarket.Rd
88e8307231d2840c59bff8b71eecba08 *man/readCyclopsData.Rd
8e1b7a7f1cd5cb9942259ffebd66e97f *man/reduce.Rd
c63357badb335253bb525bd3c988b390 *man/simulateCyclopsData.Rd
bd801448bd0028e258b3ed5059dc3af5 *man/summary.cyclopsData.Rd
aa314d9b381bbbe25b202a1d67e8bae0 *man/survfit.cyclopsFit.Rd
ef2ab5467c0eaec6a9d7ef874ee79b13 *man/vcov.cyclopsFit.Rd
8dcb7839a22759a30266a5bb85615b6e *src/BySum.cpp
d524a844d4818c609ad5bc9f8ae09283 *src/BySum.h
689b084e8433c77b51987764b5387630 *src/IsSorted.cpp
2a29ec0260d64c52bdece447322e4b34 *src/IsSorted.h
fd89aedede07c11aa139157f5756ea7a *src/Makevars
5dcf9d0c686cf8fe13a47341dbb87ba1 *src/Makevars.win
ec8fd69cb1d8e514d6832f3153dc9c7f *src/RcppBySum.cpp
f3fa3abf61c148ddcd8ca7cdce173700 *src/RcppCyclopsInterface.cpp
61ef2289bd5d8afcf631f250322b50dd *src/RcppCyclopsInterface.h
745a11b269dbe0e2ea64bbff1db30e74 *src/RcppExports.cpp
ce22b2c7b55ee0734e3f0e446e5a1ede *src/RcppIsSorted.cpp
c77b201d0f14a5f25c22211dd05d1394 *src/RcppModelData.cpp
76c80e12f1a0bfec94c297919030a91b *src/RcppModelData.h
23eb55caf6bf6c1f65a7f3da8a1b8bc7 *src/RcppOutputHelper.h
3fbbcba7ac9590f694e7c32860291ab6 *src/RcppProgressLogger.h
8a2f644f6bfd0ce48a2f17288021b34b *src/cyclops/CcdInterface.cpp
a6fef13d330c4b2f9052f35066ccb365 *src/cyclops/CcdInterface.h
09cd1dea64564ab5131f510850393f66 *src/cyclops/CompressedDataMatrix.cpp
34ad4331c09fbfeb523bbc42c6e129df *src/cyclops/CompressedDataMatrix.h
ef16ffd39d6ec75142fd5d341e179e28 *src/cyclops/CyclicCoordinateDescent.cpp
587315f033326c4b45d9dc0e8c811732 *src/cyclops/CyclicCoordinateDescent.h
50a6000f95b2843b674f81ed4cd5d05d *src/cyclops/Iterators.h
9c869082eb411b0336466d79ef328d6e *src/cyclops/ModelData.cpp
084b7437a86a0033258c54ed208d68ed *src/cyclops/ModelData.h
9e4f87ef062b98453bb1a50cb6d96ba4 *src/cyclops/Thread.h
1ab1469b0831e9a22d6b06d562cc1fe9 *src/cyclops/Timer.cpp
e6bdb68298cb8e55f0a229d9d942e1e6 *src/cyclops/Timer.h
8be32f8b38350e9fef0434ed7bb3bf53 *src/cyclops/Timing.h
d362f068d0528f873a08dcc87bda3f0a *src/cyclops/Types.h
7c8b591d5a37c1a0cb5350bca69b332f *src/cyclops/drivers/AbstractCrossValidationDriver.cpp
159b5515998a958aed7e36f9f3c0fe8f *src/cyclops/drivers/AbstractCrossValidationDriver.h
a353c3abc6cf87e80b47761c8cb9d6b3 *src/cyclops/drivers/AbstractDriver.cpp
3897f6f0eb92d1e198183e5d29d05c01 *src/cyclops/drivers/AbstractDriver.h
7937cb97a90a88ffb6001a34a209f6bf *src/cyclops/drivers/AbstractSelector.cpp
fbe92672e384afbcbff39824ba07ef0a *src/cyclops/drivers/AbstractSelector.h
f68dcb1d897ec14a6dc6a1bfc1f6f7ca *src/cyclops/drivers/AutoSearchCrossValidationDriver.cpp
9e8d1ea534b58bf5f8dba681d3d63b4d *src/cyclops/drivers/AutoSearchCrossValidationDriver.h
e9e9aa00cbd5f43dfd17b3dcdea785ad *src/cyclops/drivers/BootstrapDriver.cpp
3b1357cc6c44be8924301406af307ee4 *src/cyclops/drivers/BootstrapDriver.h
9f9f8598c20eb3d439d9c3a3e8b2c405 *src/cyclops/drivers/BootstrapSelector.cpp
ae4f1f7a53d89bf39fb8f94d600a1cb5 *src/cyclops/drivers/BootstrapSelector.h
8b082447b4d4af3dc3416b36caedb07d *src/cyclops/drivers/CrossValidationSelector.cpp
4bc140426958fcca33fab821261ca6c7 *src/cyclops/drivers/CrossValidationSelector.h
e02ae6ae00715139f36d3bacff0021db *src/cyclops/drivers/GridSearchCrossValidationDriver.cpp
eb4062a8c64a7facec67b431b3d716ea *src/cyclops/drivers/GridSearchCrossValidationDriver.h
092921d03e009858ce40e274e3f76efb *src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp
7d1b25d5c2eba0624d1079ed458c8970 *src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.h
0feb90b00f2168581e094bf95a8766a8 *src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.cpp
81093bdea49512b81a8252aefa180a9d *src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.h
0105c2306ff4f6d12790bc79a1d4372d *src/cyclops/drivers/ProportionSelector.cpp
e2dccd23788149f1d74946d2a7cbca53 *src/cyclops/drivers/ProportionSelector.h
1fa403565e4ed2d1760e757c5fc6522c *src/cyclops/engine/AbstractModelSpecifics.cpp
1d50bf37bd732b36faabf534cd90102d *src/cyclops/engine/AbstractModelSpecifics.h
26bc95bdfd46c753c6656281814410ed *src/cyclops/engine/ModelSpecifics.h
1cb46cf9d0a722c46cae63aaada98fd2 *src/cyclops/engine/ModelSpecifics.hpp
34c81b73804584089f86fd5c4fbb01db *src/cyclops/engine/ParallelLoops.h
caf113fb4354360f66fc4346260676b5 *src/cyclops/engine/Ranges.h
8dc8e79c57cc0293c52bcf9ec7bf258a *src/cyclops/engine/Recursions.hpp
c90d8c9fbf861680760f4a7b3d8a12b4 *src/cyclops/engine/ThreadPool.h
579962f6f4266c4fb255e392df4cbc5e *src/cyclops/imputation/ImputationPolicy.cpp
2e36d619bd034b0f2af6220d6d44ec0a *src/cyclops/imputation/ImputationPolicy.h
e77c7db7c77b6ecbd16fb9540a12a7c1 *src/cyclops/imputation/ImputeVariables.cpp
3371cc799854f7dae9cfad657ac2de78 *src/cyclops/imputation/ImputeVariables.h
aa7fa68ed9e01cffaaf5db26dab291eb *src/cyclops/io/BaseInputReader.h
10379c189279adefc70fb816a1058796 *src/cyclops/io/InputReader.cpp
969be93ca26739a4838f2c48518322e3 *src/cyclops/io/InputReader.h
bb6d2aae0b046e49ee09e6320e5cf1e1 *src/cyclops/io/NewGenericInputReader.h
28c51a4b72d225b46343377c22a2fae9 *src/cyclops/io/OutputWriter.h
337c02ecbe4037e50b512d2696ab99c4 *src/cyclops/io/ProgressLogger.h
1a08e191e9a29c689c57555e3692f844 *src/cyclops/io/SparseIndexer.h
22ea12e3c842366af1e9ce8df0cdfbaa *src/cyclops/priors/CovariatePrior.cpp
cf2f32b0a99972679aac9e097654d78c *src/cyclops/priors/CovariatePrior.h
5a4d0ba4a064499b5607e9ebb8dc4e2f *src/cyclops/priors/JointPrior.h
bff9084794d10e09ecbad211862a11d8 *src/cyclops/priors/NewCovariatePrior.h
7c7029f5514fe299904f792d8f59d884 *src/cyclops/priors/PriorFunction.h
36a8c5ad8e670d6c23f41c480b437b56 *src/tinythread/fast_mutex.h
8a528ad8b8ceed7f8fb75d628ffd5b63 *src/tinythread/tinythread.cpp
41387be167ada858356bf2475fd6d15a *src/tinythread/tinythread.h
1684e808dd3b309d0ffc4bfc16d4cc9a *src/utils/HParSearch.cpp
670bc336c29e41a6793b271c124301b2 *src/utils/HParSearch.h
8f24cec642731dde4bb17099841769a7 *src/utils/RZeroIn.h
69cb3bd105d2e5748b3fcca2a5fe3f4a *tests/testthat.R
d225cb32609127c8857ca7b512f3b91e *tests/testthat/test-KKTSwindle.R
e067d2c7c2508bbbfbbaaa831a3eb76d *tests/testthat/test-believedBroken.R
4762ef77c75a9b092ed4045ff6f057e3 *tests/testthat/test-conditionalPoisson.R
3002e186a83318357a7b8dfcb5b5a813 *tests/testthat/test-correlation.R
3a6007c18d9fdb4adbcde515686bae93 *tests/testthat/test-covariateRegularization.R
7c92b8e407b2c55d522a453f340be273 *tests/testthat/test-cprViaSql.R
97e921500ca428f4ba66be868c95157a *tests/testthat/test-cv.R
d19bb80c70ab7af846c6315b2fc04be3 *tests/testthat/test-dataConversionStratified.R
eb8d85be3b4b5fefd0b8d4596624b838 *tests/testthat/test-dataConversionUnstratified.R
7ff5428e2adf55242323e923d0afe9f5 *tests/testthat/test-dataManagement.R
4c0b1dc39712a0bc964f72a0cfabe0a0 *tests/testthat/test-isSorted.R
aa4ed4fc5308737457009e12b0e124c6 *tests/testthat/test-largeBernoulli.R
f6e5ab6763135a8efe5637a31d72a4cd *tests/testthat/test-multitypePoisson.R
e885739912d77bd56a58e5edca4bea87 *tests/testthat/test-normalization.R
8e989f91d594c264fc233d2c1bac5a6e *tests/testthat/test-offsetPoisson.R
2569812a473728045f7cc32f4886f4c2 *tests/testthat/test-parameterizedPriors.R
801217af90688514bafd426e0ca90a2e *tests/testthat/test-predict.R
7f674faf17406a779abfa7a018f0fb56 *tests/testthat/test-reductions.R
3cfcd26b89867db1b7a5865bd80108e6 *tests/testthat/test-smallBernoulli.R
3c37bb80b0ad50d5b9dfcda03c67e2cc *tests/testthat/test-smallCLR.R
8eecc69f05cf175ad84de99a70e917d8 *tests/testthat/test-smallCox.R
0dc8b657890abf60b300c67856a0dfc9 *tests/testthat/test-smallExactCLR.R
7dec35624d6032ea520195222e4c3e9d *tests/testthat/test-smallPoisson.R
87f085aa0e255f50055d0015e596a0c7 *tests/testthat/test-sqlConstructor.R
d77d72312cf89e5b38131118969164ed *tests/testthat/test-survfit.R
3767926737c0ac1eefd362e33292a3bd *tests/testthat/test-weighted_cv.R
0e9f99eaec7ad589f89fe0daf6f6bd9b *tests/testthat/test-xyConstructor.R
