90a79b7072be9077880e8c8f1a2d30bf *DESCRIPTION
d32239bcb673463ab874e80d47fae504 *LICENSE
b96d5b425ee498d175addbeba4904678 *NAMESPACE
680dd31933849f567d91aa2e6c1f4af9 *NEWS
89f6d7a0a9777519816e7558bcd77447 *R/Arena.R
2f3b257eebeaf81fe45e2aca2fd87eb0 *R/BacArena.R
6fdffbba6900277ad47bc5d8cfcd686d *R/Organism.R
08fea68d1298cc5d913f2d115adde694 *R/RcppExports.R
0f500d7f642f07a20c668a7cd1b1ddf4 *R/Stuff.R
19a911681ae473f5f1bee522e5634ff3 *R/Substance.R
6a2f9e87821cf4a0bcc964b6b1abdb79 *R/data.R
7ca2ddb920aeb49496c9c5a9e5710684 *R/matlab.R
b62f385acaa53e19a35f204457bed1fb *README.md
c134dda32af664575b208990b4a8c019 *build/vignette.rds
c5e6fa04c95319907b1f6e63040a95f0 *data/colpal.R
1e185a542f3c5240073841157eba5f7d *data/sihumi_test.rda
c9386726d765d30c0e144d43476e2820 *inst/doc/BacArena-Introduction.R
3b3998c9c5898ceb9b4be7c68acf0d96 *inst/doc/BacArena-Introduction.Rmd
3042a9b3d1eb7b99548ccdf8c184c7ce *inst/doc/BacArena-Introduction.pdf
ef02a1608ce151168c61f3fbecd14c29 *man/Arena-class.Rd
a147324073ca30fce20bf9de1312b5f6 *man/Arena-constructor.Rd
05bb17bc35182fda580ed7dbc29ae733 *man/Bac-Constructor.Rd
1258787e680eae9c5f93895f3fb661fc *man/Bac.Rd
1bd9fc5d4d8013a1184fae98d1bd9e1c *man/BacArena.Rd
29246c298e733c7a6b765d12c50e7406 *man/Eval-class.Rd
51127bebe224fb48fc6cdfc17cb8bea6 *man/Eval-constructor.Rd
711c8a6ae345d2b19ea0259228a54252 *man/Human-constructor.Rd
dbec8194f0564ee5992ce899b8b930f4 *man/Human.Rd
842c4a2d38f122d15b9c8b9314c50334 *man/NemptyHood.Rd
4f3e49737ae87552713005c83aa8f165 *man/Organism-constructor.Rd
6f9b91c4edf82b30980736739dd14161 *man/Organism.Rd
8fcafd6c90cd38d48bf7dc9699cc2894 *man/Substance-constructor.Rd
05f13a2e7a205c76c52886e0cb58541f *man/Substance.Rd
62c3182e6b5605bb38e0af30615809e4 *man/addDefaultMed.Rd
c413b97555edc1656eea09771747f50c *man/addEssentialMed.Rd
365542509b7722c7a4f61c5ea2c67e06 *man/addEval.Rd
2c390b8b2eec6d298a0faddc8da85e94 *man/addOrg.Rd
44e0a2de747d65f1a336e862c5136f38 *man/addSubs.Rd
4413558d75563cf9b4ebf4defa34c38e *man/cellgrowth.Rd
60ec60ede3dacc5a44c6f7d30f335f1a *man/changeDiff.Rd
e16297c6526c658f1b3c363fcf048e4f *man/changeFobj.Rd
bdb27f15dc57fdb6f976876b55ba69e2 *man/changeOrg.Rd
f3ba839aea40bd644532a48935a83a69 *man/changeSub.Rd
9578b48238924477afcbf2609342e745 *man/checkCorr.Rd
078c9db0f3e94edbe5c7138d0c6d8a36 *man/checkPhen.Rd
66a266b8be4c2d87422a92ba920b5d4a *man/checkPhen_par.Rd
5a987dbf79ab491ab39ec0a898e58566 *man/chemotaxis.Rd
7a557d6b01f2ba3c256cde852a0dbdbc *man/colpal1.Rd
0b718c58c24a95d2986c4ed0d985c070 *man/colpal2.Rd
c40a25319dbf881fad1ab069f8efe601 *man/colpal3.Rd
f6dd771df73aa602f402e9e55f6d989e *man/colpal4.Rd
0bcd843d406c964a4f163fc3315a3662 *man/colpal5.Rd
8f816481167ab175bdefad80ad6b5b57 *man/colpal6.Rd
9f57a210452ce585ff835e5e70127237 *man/constrain.Rd
b713bdb404fc53a7edb5c49ac85e101d *man/consume.Rd
46d1172c2d6863ca89b0cd1e0578d8c9 *man/createGradient.Rd
be8fa047fff4e2d8321647f503010aad *man/dat2mat.Rd
7dc424b5ebfd3ea71cc6e0cb615ca3ef *man/diffuse.Rd
6ff473d5e9ead1e06a2ad8799cc5f8a1 *man/diffusePDE.Rd
e136d6d2c52fd7a251a950838cdc0f66 *man/diffuseR.Rd
5c752b55c609e97ad3e4fb385ca6eab7 *man/diffuse_par.Rd
041a36100d3fc9543ac0fb6fa19735d4 *man/emptyHood.Rd
a126f4649e2a883d59bd7dcecef05b5e *man/evalArena.Rd
8b7be856569879d33106a89e47226050 *man/extractMed.Rd
09d9f6c0645b28a95a43851c90a36966 *man/findFeeding.Rd
c898506352eb6f80f055792ec5fb0fcf *man/findFeeding2.Rd
5fbf26c39705f68c43f6cec6699018f4 *man/findFeeding3.Rd
9106584e2059768eda20da3278ce1b0d *man/findFeeding3rep.Rd
61fcf09fb1c86339cb29601506a48180 *man/findInArena.Rd
7e45fa0264874982be789da58fe602bf *man/findRxnFlux.Rd
7ac13bd42b24466a8097b8e239d0d2b9 *man/findrBiomass.Rd
1f585593c0eb50c28a0ddd4fb6483314 *man/flushSubs.Rd
26280ad477aa8e3f9ce31de292ff8e34 *man/fluxVarSim.Rd
01514a5b2e827cb43cf9fe5db63ea608 *man/getArena.Rd
68664bbb83b7dcf9e0f18d612da04e39 *man/getCorrM.Rd
b9e992e66c669db2cef5915143f15f22 *man/getPhenoMat.Rd
6b65c65300b3484226f4e860d964f0cf *man/getPhenotype.Rd
2e246a6161318ed7eedbc2608f2f8b00 *man/getSubHist.Rd
4bb175ad009cbd399dce0aeb112f1bed *man/getSublb.Rd
bce9a8416c86145188414debf83dd480 *man/getVarSubs.Rd
0b4dc0411b520f97b57f3367dd3d0ee3 *man/growExp.Rd
4ec676c486bae2965c0dc1ac2931c9fd *man/growLin.Rd
31b27900f3936c2863908bb4f4563405 *man/growth.Rd
2f95cbc67ec2fa32e26f68c7ef0f8ab5 *man/growth_par.Rd
956206afb4cace92f761dec17630effd *man/lsd.Rd
115e0224b1e9615426547b1d9a645575 *man/lysis.Rd
a68646d902af33700b8b8a0b1556e821 *man/minePheno.Rd
56172e2e78f0a80aea821b4a3d67d73f *man/move.Rd
7c3c776a4a494c75efe1f5a30a89f1e6 *man/openArena.Rd
9aea288d0ffa81f2998392997c44d993 *man/optimizeLP.Rd
2dcb273c0690439191eedf590a0c3639 *man/plotAbundance.Rd
dcc07166b949c7750a0ad6d1c2528683 *man/plotCurves.Rd
791bfa6cba4e4b5c7b816507fe584abb *man/plotCurves2.Rd
dfe6d75579ceb143e18a919b5ddc4983 *man/plotFVA.Rd
f410b60b6249fd69bab3bd56b61d0473 *man/plotFluxVar.Rd
67211a923619d99b8178d55160bd4232 *man/plotGrowthCurve.Rd
4506b3f18507b62d989623b4482d5ca8 *man/plotInterNum.Rd
009256b31c9752b1e86fc3859a856a26 *man/plotPhenCurve.Rd
41d312d2907151837c1d0d256553c331 *man/plotPhenNum.Rd
8bdce09184335ce6625fa1eac39f2fd9 *man/plotReaActivity.Rd
9bad255250e4dec99b74669f98b5c5b5 *man/plotShadowCost.Rd
e67f4d5f3f085a9f54d5526248e05eb1 *man/plotSpecActivity.Rd
e2bcf269fd5622cd8dc38d28cd711356 *man/plotSubCurve.Rd
ab3f555733c91c092da251d19940844e *man/plotSubDist.Rd
4ed11d6f9c0438df1c49122a6a257901 *man/plotSubDist2.Rd
eada7b0004d6b61b72333c4fb9e0a0b7 *man/plotSubUsage.Rd
0da56c6f4c06ce09c1d4a790ff898949 *man/plotSubVar.Rd
7c79b597386c976a109e2cec92b9f267 *man/plotTotFlux.Rd
65de8f4006e3217ba33aba69ad356902 *man/readMATmod.Rd
5a03b1419926a3d46e52b6a46e5b5b3a *man/redEval.Rd
8ab9708aeded4d3218b3c9e82f6b7fb5 *man/reset_screen.Rd
83edb42e54234e13a4ba97a2d771973f *man/rmSubs.Rd
0bc58793ff6ab557eb8e1d28edfc9e34 *man/selPheno.Rd
62d3e6aa622630d81caf99ac78e27b3c *man/setKinetics.Rd
2d1a4b1e01daa92fc7e9a13843d5a59c *man/sihumi_test.Rd
3e30dddd197368d32987d800c123402b *man/simBac.Rd
4d065b1069a58d9748b1a9ce8f129714 *man/simBac_par.Rd
7147a82471836a704ab358193832776b *man/simEnv.Rd
864422793f419b4c2f5a7db968b9ea18 *man/simEnv_par.Rd
f2ed9d562892921a35889623ed20e43e *man/simHum.Rd
7873f338b39bd946f0d1740675d74f3c *man/statPheno.Rd
27d81ad733564caae78a9cdbaab8c5e2 *man/stirEnv.Rd
962126645c4a870ad354ddf5c7d7358f *man/unit_conversion.Rd
d619552be28ae8b1036a9cdc71b1085b *man/usd.Rd
924209c5bad698313b6f9d0cd2b7d519 *src/RcppExports.cpp
13aeea7eb96b66ba98098659d3cbe2ce *src/addBac.cpp
93fe24d90a8dbb8a8e301c955568cd07 *src/diff.cpp
af7cf759c6fef52c14ed3a6bb40dc2a7 *src/duplicate.cpp
77e6d68dd1da9733aec3c51956f40bc2 *src/move.cpp
3b3998c9c5898ceb9b4be7c68acf0d96 *vignettes/BacArena-Introduction.Rmd
