35633c7e025154dbaee1adaa5dc32fe0 *DESCRIPTION
8c466e410715826a7a011f3da9279ed8 *LICENSE
9c41050f5918ddd43cacfcb698abb033 *NAMESPACE
3a6ae4492b82f12a4aac3179a53a4395 *NEWS.md
e28d63c62d4aace79e7c8f3ab3c245aa *R/aa_amr-package.R
1dc7627db4553a6159c1554c2b411a97 *R/aa_globals.R
826e4c2b653be7b829e1dc45f1ea97f6 *R/aa_helper_functions.R
11c452b2647af4294f0150b813e40c46 *R/aa_helper_pm_functions.R
96b26057ed8785bc2284cbd4b54b8632 *R/aa_options.R
180e31756f6e1cc778967c0049034e3b *R/ab.R
6d258f290e2df66d93ce085aed56d80b *R/ab_from_text.R
929f67368eadc154ff4b3244ef85eedf *R/ab_property.R
5dd5e2fbe688cf17f26fbeb6d4a3d83c *R/ab_selectors.R
f18b18933d9ed9fdf820a79f0b5488f7 *R/age.R
60928434539aa56bc9b86fd8588c4ee7 *R/antibiogram.R
9d02899be83b89e0cf9af85ce526c2cc *R/atc_online.R
b004f9504687e225b4eeb209485633f0 *R/av.R
18ab79f3f2e3bbef23f7dff32ccd3d0f *R/av_from_text.R
7947b2808c3f241721374a0c561b593b *R/av_property.R
e572ba107ac5d2216aa79068d8c4bf42 *R/availability.R
4b72f49ecca4279913a4460e78f21be5 *R/bug_drug_combinations.R
bb9e44cde6f7c7c8b8f171dc2798b1e4 *R/count.R
70b424de8a9a53f1f99a66a2f593a092 *R/custom_antimicrobials.R
fa671f7f11c383a28aa545cba07644cf *R/custom_eucast_rules.R
15cd1caab4a214d587b8dc722fd2037c *R/custom_microorganisms.R
c9a8eb5032c16ab4d078cdcfd05b7964 *R/data.R
e8c73437c15c888bf910a118e2df63e4 *R/disk.R
b1cdf9eed312264f19761770a174c72f *R/eucast_rules.R
fa48254a92c610e1a4802d6d56c6addd *R/first_isolate.R
9829beab30a84fb3fe8ae5c0f72c84cd *R/g.test.R
a07221d41f53046c68e3f51ca60f1bc0 *R/get_episode.R
679618c043dcd1aa251a360eb22f778c *R/ggplot_pca.R
f159c75eaf2488f563c6f8a3d464fe09 *R/ggplot_sir.R
c27ad8cadfc78d7b794ffe373e3e4a51 *R/guess_ab_col.R
3b92cc12d425e80c3623e1385583eca8 *R/italicise_taxonomy.R
7e7319ce10e9c9446a3c3ca510431536 *R/join_microorganisms.R
7733a8d4d6f5ea4fb9bb0ba4d651c262 *R/key_antimicrobials.R
fadf8205f1d3560ce9d96498cd731fe3 *R/kurtosis.R
fe241ebdf4ebed4efd6d00e534888e47 *R/like.R
9d9c4741b50f11852d7fcfbd5628e379 *R/mdro.R
e3d45093a7422a69f42a1170d7c749ee *R/mean_amr_distance.R
7ff8861faefde6ebad494bb1657e85f7 *R/mic.R
27235891fe6da2a46cf29ea7d4c9e987 *R/mo.R
c4d850335dda8e74d2d05225cba56811 *R/mo_matching_score.R
4b5d0bd70c45c652931f6129a8f17470 *R/mo_property.R
909ec615ae3ae6ad9cd91decf17b6854 *R/mo_source.R
90fb1549f72ff3b73a365f7cded061e5 *R/pca.R
07e4e544bacc4a0b431bfb1799013aa0 *R/plot.R
e24cf7f6f5ee31fc6aad920db851d372 *R/proportion.R
703f19684a32ebe5e0ea3b8852597fe4 *R/random.R
c1fb4dc7edbd9b81e4ae964fa46055e1 *R/resistance_predict.R
3d98975cbb5b9ae8b4982648e6b76dde *R/sir.R
6a9e61684bdcd7ac77ae442c8ea2f3a7 *R/sir_calc.R
3cd910c9f022c98448dd6b2fb74859e4 *R/sir_df.R
59294e0710c0089c2ea4caa31f28e8bf *R/skewness.R
f9e358754761fac6b6fb7c53732e7b39 *R/sysdata.rda
524e9abc6746c4079d68370611428f64 *R/translate.R
27f5d45842430f33c7a34834c0d87dc4 *R/vctrs.R
0a04c06aa5f0612a5b2dbbca02af5247 *R/whocc.R
e13a9899144aac4d1a03a022e1f7987f *R/zz_deprecated.R
49b764906515023cab41e18e6fa8c36d *R/zzz.R
7a9f7b68c937befd388e79f282cedaad *README.md
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
67b2fd1cabb759d0effcb77e18312a2d *build/vignette.rds
4ca011b19e22feecc1e1775884ab2d68 *data/WHONET.rda
99089768a7d0bce26fe85286769e6786 *data/antibiotics.rda
68588fb28a99606b18a0c1d58722257a *data/antivirals.rda
e958569b5f3bd6d1b187fd97645cbd9b *data/clinical_breakpoints.rda
5f66a495a8470449472585924f6f5ae0 *data/dosage.rda
aa7ea9a3fbfd35238e571594f9a44063 *data/example_isolates.rda
a0bfcc9c91023d822e843ff9aae3da74 *data/example_isolates_unclean.rda
02ef8fa799190a6c9e0a050fd1d1a404 *data/intrinsic_resistant.rda
31f35822aeb68d3c6ea7061a20ad5f08 *data/microorganisms.codes.rda
d5ca1846bdc65dadf80459d1efc884a0 *data/microorganisms.rda
77d6b438a3af3642e6677e433cccad3b *inst/CITATION
14530226c2f8942fab14785f800a1e83 *inst/doc/welcome_to_AMR.R
67f24aae0379ad9d97fa9bcc52715c0b *inst/doc/welcome_to_AMR.Rmd
f0a3359df71d05c2a407dff35cd60788 *inst/doc/welcome_to_AMR.html
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487448cc1b7f76a381ee14f584a6cf51 *man/AMR-deprecated.Rd
a121c7a6d2f1714991c5b402256ef208 *man/AMR-options.Rd
48ae5c510e499ca7ec9ec9c77664c4c2 *man/AMR.Rd
dd0ebd9355e71157a8f2c5cd1f990f78 *man/WHOCC.Rd
6edce1526ab3ecd93440f7e19e9dbb69 *man/WHONET.Rd
48e05b5ca6f5660ed81b806627609c05 *man/ab_from_text.Rd
d6a93c8a6c20fdb85024394cdb8cc184 *man/ab_property.Rd
e50433230b9086618b757e29a6e75217 *man/add_custom_antimicrobials.Rd
6abe9b382230561ee61eff6bd1dedbd1 *man/add_custom_microorganisms.Rd
a3f690365b107e85fad5bf1d89c4e727 *man/age.Rd
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ddb1184b05f7862b1ce97aae75df8f5b *man/antibiogram.Rd
67d3045eb8f70689c0574d58193ffd22 *man/antibiotic_class_selectors.Rd
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7517ed2fdcab4c609eb5e7b30f1b8980 *man/as.ab.Rd
56e63ef9fa6dd7cc60fb26c093c44a94 *man/as.av.Rd
1da89c503e5db3e23e8f84300410f4e8 *man/as.disk.Rd
4e31a83692725f8d6939b6e2ad0f5f80 *man/as.mic.Rd
56f62848d4731c51984e034a65c4ce64 *man/as.mo.Rd
72e57e36206127cb025626e2ab719781 *man/as.sir.Rd
c5502f72264a83c7ed636a4d4522669b *man/atc_online.Rd
eea49048e2745521c92c3624b2a13466 *man/av_from_text.Rd
25eb1526787cc08823378527dd647217 *man/av_property.Rd
bb92847cea1d04ae883f6493b9f282fa *man/availability.Rd
c16a811de284ca0cb44fbc1b6df2518e *man/bug_drug_combinations.Rd
eaa8644a75fc4bd4a21063641b3dcbf4 *man/clinical_breakpoints.Rd
38e930d7c2b84431223b02d57a76b58f *man/count.Rd
3cd75639beab03ac169bf68d9b219bb6 *man/custom_eucast_rules.Rd
b529a0f0d55715dbd5a29fe196dcdb51 *man/dosage.Rd
65ff856647edd0980a2771869d31b85f *man/eucast_rules.Rd
c119158bc9fa4a3204408c40d6b12a65 *man/example_isolates.Rd
89caa1a2301713f33aeb6e0dbffe013a *man/example_isolates_unclean.Rd
8e67ecd3c923828cf9ff6238521a9a40 *man/figures/mo_matching_score.png
c18df6c42bd26e5d1d9f5f3fd097035d *man/first_isolate.Rd
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4d3e8a2d2ee72f429f67a9b090858b17 *man/get_episode.Rd
7ca728b57b115119b2726a29a443e76e *man/ggplot_pca.Rd
d0552b38f1ee4cb9bc55cc9e2fcbb920 *man/ggplot_sir.Rd
922d7778a73b01ece2a6fbbaab420322 *man/guess_ab_col.Rd
86c6992178321b499d170c2fcf9cc192 *man/intrinsic_resistant.Rd
8ef0040f18eaa198d7871c3aa24ac242 *man/italicise_taxonomy.Rd
9816f2d6fa7c0a07099881bb6422c0cd *man/join.Rd
59f22b1c4f3262b059e3a13450ca9ea3 *man/key_antimicrobials.Rd
bd15bcaefcf56175a2b808f7396ed814 *man/kurtosis.Rd
77a4be9b1d25f0d55b3aaf46797d49e8 *man/like.Rd
e64659567ae0fde966bd6bad432fb2ae *man/mdro.Rd
ab518e4c2119884889cbb1a24b8feee5 *man/mean_amr_distance.Rd
6f1b17b49a1b712eb54dfd3c51a2c824 *man/microorganisms.Rd
cb343e2d670cac7e5bb37fd53a209259 *man/microorganisms.codes.Rd
072aafa84a4ffe6f746d5beb41f27f05 *man/mo_matching_score.Rd
3c5174ac5d2f5316d2be9777cc726f8b *man/mo_property.Rd
34080098e230557d7b062672cc1c142e *man/mo_source.Rd
e45d963e981ab83331af5090485e876c *man/pca.Rd
be875aa903249f881de83cd829f597f5 *man/plot.Rd
ca0a5c19059fb58b4c3003cc3e235cdb *man/proportion.Rd
4d3de1edb9a3bd8d14e0ed472245cc92 *man/random.Rd
712fa65688096efd1965e6fbc8334c66 *man/resistance_predict.Rd
99f6c8f2b2f09a1cd08b83d6c0dc0046 *man/skewness.Rd
39aaa53a5d30d4f34858779c65a217b1 *man/translate.Rd
3b08bf998f8d07d8e526bf50b73dc51e *tests/tinytest.R
67f24aae0379ad9d97fa9bcc52715c0b *vignettes/welcome_to_AMR.Rmd
