a5c0cc623cfe89ea339c180a5869bb4e *CHANGELOG
b74cfe5ef0b9240572d1f4d608f98832 *DESCRIPTION
5192b253d04412cee90c65e01201ac63 *NAMESPACE
4ff174a4118c4a183b9226eb4262875d *R/DiversityCurves.R
479b9eec4bb28d43ab00aedfbc0cb3dc *R/RaiaCopesRule.R
c5833247b3ab40d072b828fed1223156 *R/SamplingConv.R
ecfaa873590db84435548e8384a75990 *R/SongZhangDicrano.R
7d0c9f47d49cce91f530943258800b86 *R/binTimeData.R
9e1246dbc2d0aa52124aa30e1fa3c9b8 *R/branchClasses.R
97ec5c81bd611260ee3467768f422301 *R/cal3TimePaleoPhy.R
8440d1a1b1281c1ba6d75030a8274057 *R/cladogeneticTraitCont.R
e0cf0220632cc563f904632d5c4e6283 *R/communityEcology.R
8136b5fd33a949b8e96bc7c2aa2e4ebb *R/compareTimescaling.R
8669c9cc0ceab1be6969b1246d0f3d61 *R/constrainParPaleo.R
80c2ca1fef255ffc2e63e6cc1bb26bdd *R/createMrBayesConstraints.R
e5415a0a198767359fc819e18b58ef07 *R/createMrBayesTipCalibrations.R
2a5db29922cbf7497975e7b4bb10e370 *R/createMrBayesTipDatingNexus.R
def1ff163e931cd21d7afaaa67265264 *R/dateNodes.R
64495910108ee8b54c22e321933a508e *R/degradeTree.R
abd799ecdb83bf6aa847ebcd78291408 *R/depthRainbow.R
a4c91a5d18c14c4c53258f56a25061bb *R/divCurveFossilRecordSim.R
9192f906b07c1191802f120fbf5a91a4 *R/durationFreq.R
69de70874d369539e3fa83750badc443 *R/equation2function.R
2e798d04905dbf12144ea9e65c0d05cb *R/exhaustationFunctions.R
2bca43ea58be71d5d03db8b1c13de469 *R/expandTaxonTree.R
5bd37dddb8d2af7c4bdeba61eeebef8e *R/footeValues.R
925aa6c68b525008814722fd89d0bda8 *R/fourDateFunctions.R
8d455b58d53efe64944ca982987d4517 *R/freqRat.R
18b08e0cd812b3e4ad8805f165d5089c *R/getFixedAgesFromNexus.R
9972630c39ec96bd240712467883ae53 *R/graptDisparity.R
df7833f97cf7caee9a40518a4856bef5 *R/graptPBDB.R
3da131c15de18c11320b7084d217a4f9 *R/hiddenFunctions.R
fdea9e9639884ecfdf08142083ccb777 *R/horizonSampRate.R
52da53deb7d91a2a29d1f6229d1d32a8 *R/inverseSurv.R
142dd39918918493371dc4155f3cc74f *R/isTimeListSequential.R
04995e1cddfed443e30d8e38108912f1 *R/kanto.R
d83dcfb2a7b276653666fb8bd456c5d6 *R/macroperforateForam.R
18c22fee35dcd3130d0ebbbc4bcc518b *R/makePBDBtaxonTree.R
76756f2fabefed72867864b145d5df79 *R/minBranchLength.R
ad8a5bafad057cedf6afb4768a7b2276 *R/minCharChange.R
783ad7e99d68929475b15555c7ddbd3e *R/modelMethods.R
0ee6b76cd2efd7b2dbd2eef2fd481313 *R/modifyTerminalBranches.R
0667e2fe35545db51bab8e240071e665 *R/multiDiv.R
9e85d7f50acfde6df3fd9d65a61ee063 *R/nearestNeighborDist.R
6e90b667f1bd79edffeb166f523c5129 *R/nodeDates2branchLengths.R
a8d848735ead0470737e83cc0e1f19b6 *R/obtainDatedPosteriorTreesMrB.R
6f75e1a9b74ede5d65747c25ab4c0a91 *R/occData2timeList.R
403d0e2fa4d94407b53fcbc660a0a76f *R/optimPaleo.R
807e74ee8cd1497e15e3fb44a5195a29 *R/paleotree-package.R
8a29b8ab9183061391f7d26bf57e388e *R/parentChild2TaxonTree.R
314e0497d6d99def75058102cb08d160 *R/parseNexusFile.R
7501e06da7b5a3bd5069e5473e8f5182 *R/perCapitaRates.R
ffeba1c162678a212f768f3077ed2316 *R/perfectParsCharTree.R
ae82a234672d012be28c5f820175f7ea *R/plotOccData.R
9e1a234958383b976111362ee19f58f7 *R/plotTraitgram.R
abdbc2f335331c74dbafca6d5b05e5bb *R/pqr2Ps.R
7da96846661c1b845f4925439a1e9b26 *R/probAnc.R
3f9f01478b43678687a5b3334c55045a *R/resolveTreeChar.R
1115abd083a359d63ae12541c16ae8c3 *R/retiolitinae.R
49406b21324976250bf7382a8d7e7a40 *R/reverseList.R
959d6ce8026400f7376302f5eca2b47d *R/rootSplit.R
69778bf50d643094ecf3f18d4e1aaffc *R/sampleRanges.R
b755dfabd8a533eb102802234df31e29 *R/seqTimeList.R
19e278b69f0e04684fdd1dd23b156cca *R/setRootAge.R
e681f6a4ee8d60fc8276f5bd2a5dcf22 *R/simFossilRecord.R
6cea212b1fb238e1cb8853e8a55f42b4 *R/simFossilRecordInternal.R
cdb28ab65c423da735a284f4a0847956 *R/simFossilRecordMethods.R
04b23da7be8f80eec38e4ed0aad66c17 *R/taxa2cladogram.R
3b5577d58dcd85d2a24da0ae7fc74591 *R/taxa2phylo.R
0a6bc5c4e2dff791df052fee9ce28932 *R/taxonSortPBDBocc.R
a4ea5648a4b933730d4afa2d85e70059 *R/taxonTable2TaxonTree.R
0f793090148721447038fc9252028686 *R/termTaxa.R
d853dace960c43fedc98f44d291fa599 *R/testEdgeMat.R
e84fb99bfeaedce663390385146589db *R/timeLadderTree.R
a9ddbece64717933fd79d1a1c2e34a70 *R/timePaleoPhy.R
02759789009a09864a92c20a6d2f0585 *R/timeSliceTree.R
689a27f3b9e57796999ff273984592b0 *R/treeContradiction.R
c7be8ba655a49cad5d7fb6d9bed545e4 *R/twoWayEcologyCluster.R
77b424f347696c0012b2878e1f23c23b *R/unitLengthTree.R
8423187be78d38af3ec09975a8bd70be *R/writeSimpleSumtNexus.R
65e415f9a9bf2fdea08776f856990432 *README.md
3f77eef7d0a08b3b97d5cf56cc097564 *data/RaiaCopesRule.rdata
f0b9ee57abc61714eda148149ec2fbc7 *data/SongZhangDicrano.rdata
ef3ff58dc33ca33553a6f4ba1f50537e *data/graptDisparity.rdata
a3bdfc8934dc8b9591d30d4e2e998d34 *data/graptPBDB.rdata
3fb237530f5ade8ac33ddd97e6b0d102 *data/kanto.rdata
f077ebe2c98eab07650805743f31369d *data/macroperforateForam.rdata
7afe8498c4d2a3d0e2d60599db8b186f *data/retiolitinae.rdata
c4e4ef39537762c865406511fef7e58f *inst/CITATION
163933ab21b635b6977ed72390232bb2 *man/DiversityCurves.Rd
a98c22cea524848367416db9e85d3f14 *man/RaiaCopesRule.Rd
4570b9f1c4b5c87e372d3a2317d9e0b6 *man/SamplingConv.Rd
b8d11ebf6bb35edd7cf8211d087ab32a *man/SongZhangDicrano.Rd
273890aa4eff7705f7baf9c617a19358 *man/binTimeData.Rd
780f84aebc117a075b86d304b53bd590 *man/branchClasses.Rd
e7749fc3d0d2f2dfd7cb3cd06b0168fb *man/cal3TimePaleoPhy.Rd
ef865b4b505bd8d610c883815623784a *man/cladogeneticTraitCont.Rd
805195a39a6741abec65b38f185d72f4 *man/communityEcology.Rd
4c620948dc80ffb822f08dd41ae10621 *man/compareTimescaling.Rd
d36e506a48e43883ed273b5c10b97913 *man/constrainParPaleo.Rd
b0733c1d10bc811c3153cb11974a4506 *man/createMrBayesConstraints.Rd
d1e216b63d46d9c7ccb6288d8ca06311 *man/createMrBayesTipCalibrations.Rd
5223adbdef96b4d220dba59c11567c37 *man/createMrBayesTipDatingNexus.Rd
6d12ae1cfb091e6331b40b2cc9ea5b0f *man/dateNodes.Rd
9f61b7b0d4f9ecffc7a057bd37953fec *man/degradeTree.Rd
aeed58e575fdb196b571d77a6cfb243f *man/depthRainbow.Rd
559cde274797dd8725aabab6dfd9efd1 *man/divCurveFossilRecordSim.Rd
d66da1ba601f9c7532888118e21cdea3 *man/durationFreq.Rd
91512a8145dc22eee8b3e77e42c1c3f8 *man/equation2function.Rd
f5110f4549a9bf09af2c50a07b74dd41 *man/exhaustionFunctions.Rd
931fc0d5674a06a8627b7d355982271e *man/expandTaxonTree.Rd
ab98c9da6f68faf1506c120e6da47ace *man/footeValues.Rd
39512df187bbadc90a1cfa2d7d27d0b2 *man/freqRat.Rd
861b0d1d5601d604ef2ba1df10ad82aa *man/graptDisparity.Rd
271720fbc29b48d5d7ca5b97acf0e572 *man/graptPBDB.Rd
006d8f3bd9dab322ef349ebb1cfc2d62 *man/horizonSampRate.Rd
ecbc6d333fdc3e19f40d73df13244027 *man/inverseSurv.Rd
c5675b60326197b6328bb2590564f2e1 *man/kanto.Rd
02eaf6af3e35650cee1b4a91836a3dd3 *man/macroperforateForam.Rd
161d9f9851e00bba61cc9a23bc8851ad *man/makePBDBtaxonTree.Rd
053085163febdd35de43f61e52bf0774 *man/minBranchLength.Rd
7f82e10e00a443a94b17bc3992600e73 *man/minCharChange.Rd
f5c1096509aa87af04209f13faac8965 *man/modelMethods.Rd
27a09197080d2f7054b1fa56bbc84f5e *man/modifyTerminalBranches.Rd
124a486a2c319199be0ae881ec950ef0 *man/multiDiv.Rd
699f04fbe9c0c92ae75949696ce4bfa7 *man/nearestNeighborDist.Rd
0c3423302448ea1556cb680227238ed2 *man/nodeDates2branchLengths.Rd
01c1fe6fbf0fa742354129e465f99276 *man/obtainDatedPosteriorTreesMrB.Rd
5a74065104e58a817962feba7f54cc60 *man/occData2timeList.Rd
20f2b811e81da123397da52a002e5429 *man/optimPaleo.Rd
1d78666d6dde581ac813e43c885b68ee *man/paleotree-package.Rd
d9d0db01483d4d82e8212a37d2a4dea1 *man/parentChild2taxonTree.Rd
3604a694fa5c0501b602424a59f30851 *man/perCapitaRates.Rd
084084bad1a33f185a31dd40e6835039 *man/perfectParsCharTree.Rd
5fa37abfa4ad2fa72761f8a230298156 *man/plotOccData.Rd
2bc75ba824138915762e450022d8324e *man/plotTraitgram.Rd
117efa6cd9b56f5791f359a587b68fa7 *man/pqr2Ps.Rd
d2fa50609cb1a87cc1614081e9709e2b *man/probAnc.Rd
54b5390081d6bfef2df875d85eae0875 *man/resolveTreeChar.Rd
6b2796861b4f7eef029216f189e89087 *man/retiolitinae.Rd
d65447298e1c098a371e19edb422d32c *man/reverseList.Rd
5e9f63ba99a864440f0ab6736deaa0a8 *man/rootSplit.Rd
891a6eaf5357d7251f536ba948701666 *man/sampleRanges.Rd
fd3d372622ead9084cf7ec47cd0cea4e *man/seqTimeList.Rd
09dbb8e8ac7ea1df874251d631ebe06f *man/setRootAge.Rd
f01b6a67535b1960fc02ce90c6fdf2ee *man/simFossilRecord.Rd
bb7796ebc9fbf72e4710f4dc50ed1d4e *man/simFossilRecordMethods.Rd
f9c1067d89a034481e847ca5d8a549b8 *man/taxa2cladogram.Rd
32698aa3e7a281f3cde46fb7e6ad53ce *man/taxa2phylo.Rd
061faa7a256c5f83c7ba63bc1f9198cf *man/taxonSortPBDBocc.Rd
78341ac8b7a79befec877dd36e8bdda0 *man/taxonTable2taxonTree.Rd
14d978d9a318f8b1d086e25dd4976717 *man/termTaxa.Rd
37f85a9ba49916d34d6dee55c4db3d55 *man/testEdgeMat.Rd
13c0887d5f1cc751d74ad17007695995 *man/timeLadderTree.Rd
7f4171405dbedede1de79ea35051a51a *man/timeList2fourDate.Rd
53cd6c00db14078bbbd253157b801a87 *man/timePaleoPhy.Rd
67e78a9e97086b44d4f5a66ccef45c73 *man/timeSliceTree.Rd
340e6825b8e9512aaf454059f2a08b17 *man/treeContradiction.Rd
ec7ca6f84d0ca28dffa699a283b20eaf *man/twoWayEcologyCluster.Rd
a6f6fa262e275eb9a8933700d1707c89 *man/unitLengthTree.Rd
82ff48b9e4ff09248ca9188b89ed9770 *tests/minBranchLength_check_10-09-15.R
8dbb4c41d24ea32996c039f9213ce2d7 *tests/testContradiction_tests_05-25-17.R
6ff87b2ac5d86114e5f8fa5dd70357d5 *tests/testthat.R
