1f7037f7cb158c4f28b933ce034f0575 *DESCRIPTION
8be96f6e163647f043f89d0653b915a6 *NAMESPACE
deb525b0968af454dcf73b067a959995 *NEWS.md
36acf36e449879cdcd83c8135c1d80d8 *R/RcppExports.R
b851a6f9fb913fc60475f62601b5aa9b *R/add_drop.R
b28081d575499f3faf4d89ffefc6b2f7 *R/build_map_by_steps.R
ade2cd36232f20736500cfd5b522b413 *R/cache_twopts.R
7f1474529562df47a923fdb55be566b1 *R/calc_genoprob.R
454590aa3533701470e85dc8000de159 *R/calc_genoprob_dist.R
62be31aa287f6e44bb5691780cfa828f *R/calc_genoprob_error.R
d38634b59bc50fc11009b973c71a8747 *R/calc_genoprob_single_parent.R
5daee8660c1665410f1d3efdd2e3f894 *R/check_phase_configurations.R
a15e3b21c2817975d94855ef467df742 *R/cross_simulate.R
4c1bac32b20c907045a0adca575c36da *R/data.R
f7b0733f76ad803bd777fa13b74cbf47 *R/eliminate_redundant.R
af811974fddd64dc9d175a1368dbd3a8 *R/est_map_hmm.R
9a6dffe7b6e37afe0de526036ffcc688 *R/export_map_list.R
9a9ada13a4dd76b142b738223733fd85 *R/export_qtlpoly.R
44c0e7824c49757296e7b7095ec765d1 *R/filters.R
6537bb0f96ee4641906260231cc50477 *R/find_blocks.R
66f4163b6daefae476313806c74d62d7 *R/get_counts.R
ae9f540fd7f625e55c0965895255ccc5 *R/get_counts_from_web.R
6ecb8aad1a59cbd1f9de282024d05150 *R/get_submap.R
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4399f6ab4073c8e660423815ebfc19ef *R/homolog_probs.R
5233026150e0444ff9f52d12bd23ecf5 *R/import_from_polymapR.R
1e2938b2026fed3f95f902b64d4e02a7 *R/import_from_updog.R
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624d9958c21a622400bed60235a546ac *R/make_mat.R
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057a9244a33df6333fcc304db52ef580 *R/make_seq.R
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745d12731c1ac662e1f3b4a900d9634c *R/mds.R
725cc9bd3857abbc921f29fcafd5a158 *R/merge_maps.R
cedadb78430e674fca4402c2f624977e *R/pairwise_rf.R
3d1a36196a95489fd8f9cc437a4c508a *R/plot_genome_vs_map.R
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b8ce8afbb7800d6ccbdcf25f62363c2f *R/preferential_pairing.R
5fd80d92bb9f8924c7e0c6661ad9b1ea *R/prior_dist_hmm.R
6e14ef648c5cf6db44a47768e01074ff *R/read_fitpoly.R
eba77afdccb8ea3198835b94bf04d52f *R/read_mappoly.R
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0a8cc165d4c390e7b32f156819e653ba *R/read_mappoly_prob.R
72b92de1b9c991dcb0741a0474e74993 *R/read_mappoly_vcf.R
f5173179562ce55391634a962102457e *R/reest_map_error.R
8bc0313a573faf608afac49604fe46ed *R/reestimate_map.R
bc9027ea6c9b1ac7d4b810bc4a8e773c *R/rf_list_to_matrix.R
e3aa6b5a269ace5a10943e0f1cf0dfd8 *R/segreg_poly.R
b95e937708f1e73aaa70691a6199cda9 *R/sim_homologous.R
03fc0bdbbeded34146dc54f107c4436b *R/simulation_utils.R
43760f6e439323ece9df19db7ef44088 *R/single_map_hmm.R
dc3c3e46b7ba5a7373d34240ca6db38e *R/single_paprent_single_phase_hmm.R
7e5cb484c97724c22e4ef9d7fbe621b6 *R/split_and_rephase.R
6dacda2a2b7ce19d9c1e4c81e2e6dd73 *R/sysdata.rda
e433a3dfd069b0a44913e4c513d9d815 *R/utils.R
aa86ca784121b3c34d851c6ca341efe4 *R/zzz.R
75e0fb87796bce8740b42010442a419f *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
65dc7823aff172c694dc9b80d1ea3028 *build/vignette.rds
d6d36b9a3d5ccf1217a6b6b0f0a9513e *data/datalist
8f0dc46ad8e2465e772929975dbe8572 *data/example_data.rda
759fc49c9b31f212fcb52c1dd9ed2ba4 *inst/CITATION
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1b67bb8c4cdac93e1fa86cfb8dfe1dfc *inst/doc/mappoly_startguide.Rmd
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6765d85ae5be3eee0434d8d4519e8720 *man/dist_prob_to_class.Rd
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44a60e08948eeaf5d6ab528c32f9b674 *man/drop_marker.Rd
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6cfc4274e69b5882550d9df8859c1ffd *man/est_haplo_hmm.Rd
1e55d9dabcaf2c1732d1a05d6d655548 *man/est_map_haplo_given_genoprob.Rd
3bea37f63110c998dd8689eeee85133b *man/est_pairwise_rf.Rd
a54eaf5f9f8a7dc9ea629be9f6d02a6e *man/est_pairwise_rf2.Rd
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9afaaf85a83746ffb570e04dd11c250f *src/calc_genoprob_based_on_phased_marker_blocks.h
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f3ac1b79697965e73b69ddf1a99ec280 *src/est_map_hmm_given_dose.cpp
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44b337a7eecefebdedfb96c01bd43758 *src/pairwise_estimation.cpp
771da77ddd46602e88ad42b09d5c60b2 *src/pairwise_estimation_rcppparallel.cpp
d355b6805cbc4e3e0cee65a24c9c73a1 *src/read_mappoly_vcf.cpp
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1b67bb8c4cdac93e1fa86cfb8dfe1dfc *vignettes/mappoly_startguide.Rmd
