fa62ce33ed30633eed6e1289e0d9b02c *DESCRIPTION
29417f07d23ac7aae97c733590bde629 *NAMESPACE
ef2044ae4e01ab9f339adf3ea667df9d *R/SCimplify.R
1e00ec8d509efcb2499501a38be18c10 *R/SCimplify_for_velocity.R
505071388683949468e58747fd21c8ba *R/build_knn_graph.R
d1d0ce5f4c2fef3cb1ca77deabc169e0 *R/conversion.R
c12962ca8197a41c30df684e09a30de2 *R/data.R
4b12927f5300bf5cb06dd821f5a5353d *R/singlecell_mixing.R
d98c745a00c7764efddbcda70dc2c720 *R/supercell_2_Seurat.R
5081df40c47a484260e06f964e0ac748 *R/supercell_2_sce.R
efdd37c2558d5d709db3ea3f938ca341 *R/supercell_FindAllMarkers.R
f3f5666c67923c08d42ff6e27347cbbe *R/supercell_GE.R
905944418de0356961fbb25d96db0277 *R/supercell_GeneGenePlot.R
7707b3c8abdac2369783537580a86080 *R/supercell_UMAP.R
98407cb9acd9bb13e3522045a8ceb348 *R/supercell_VlnPlot.R
3f229c29c9f423c4d280c95efdf29ee0 *R/supercell_assign.R
4692d31900ca0d9ded379d068441237a *R/supercell_cluster.R
aff9429e216c7d3d5fd2c244447bee42 *R/supercell_estimate_velocity.R
3aff3d071b09b11f1e174fcca13ca9c5 *R/supercell_merge.R
067c61501261f18fd8df1308867ea661 *R/supercell_plot.R
1796232ee4b5cc540e2b4050cd121150 *R/supercell_plot_GE.R
8df777f9659f1c24f529b7a168d8adee *R/supercell_prcomp.R
c86747ce92164c04effc571595e69fe6 *R/supercell_purity.R
dfd2765e23fae91c1272ddbd6d575386 *R/supercell_rescale.R
2243d5f296aa52e7c0a28d803d2372ff *R/supercell_silhouette.R
2cf2bf1e88bf6c36c8da5fc46f326689 *R/supercell_tSNE.R
c170256563fa3afe7707e97ce90fc327 *R/zzz.R
05f4475e6165e45149e533012fbb3e65 *README.md
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
f41700c21232f3ef14c4e1435b7f0079 *build/vignette.rds
49cc8b465f1d4842753ab5c6dd138a86 *data/cell_lines.rda
544dd8c49bc45904ebd2ef303fc9a911 *inst/doc/a_SuperCell.R
884ea2185c2aaf55dca61904ba574798 *inst/doc/a_SuperCell.Rmd
1db742d10a2217d0a6c558fb7fbc654e *inst/doc/a_SuperCell.html
7e043ec2587de8def765c038fb9a3d74 *inst/doc/b_Combined_vs_independent_sample_processing.R
f1850f17215432e477897e3837e23a98 *inst/doc/b_Combined_vs_independent_sample_processing.Rmd
650fc195ac5d08107c046119defa20d0 *inst/doc/b_Combined_vs_independent_sample_processing.html
7f8601b3a436c3423f122fe1a6b34f47 *man/SCimplify.Rd
cf64f99368a941e227ac4611f1ff536b *man/SCimplify_for_velocity.Rd
dc1df2169066200b883cccd59e2f6d4c *man/SCimplify_from_embedding.Rd
0eb8b0840fdac6b50e85ce374cf08ff6 *man/anndata_2_supercell.Rd
0763e14f6f1317fcd4bd7b0744e3e17a *man/build_knn_graph.Rd
4ba1e8707adacf3aaf7c3ea2dfa1908b *man/build_knn_graph_nn2.Rd
5790a4cfbcb9c05521812fe36ef00ffa *man/cell_lines.Rd
98d3c414b7da27611321aba3f16ef8aa *man/knn_graph_from_dist.Rd
76c801f2235a80278efe9c9198394a61 *man/metacell2_anndata_2_supercell.Rd
8fd9b69a83734d7ef5ed93fb098e892f *man/sc_mixing_score.Rd
64704cd00dca334cc8372a1e8a0d50f3 *man/supercell_2_Seurat.Rd
d4e9e4d8a2e05a9acb1675aef48fb1de *man/supercell_2_sce.Rd
472711fd6b9f6635a16e43f5e1e7f748 *man/supercell_DimPlot.Rd
b435b48863f3a2b656449fb4085bcf94 *man/supercell_FindAllMarkers.Rd
a08a436b4fae110753b5f106dcb1e2b1 *man/supercell_FindMarkers.Rd
c3c1b68db372f61949a340fe1b736992 *man/supercell_GE.Rd
594bdc67b811fef006ef27da9db0c777 *man/supercell_GE_idx.Rd
dc9013dd952cf52e714f62a0adce0ec6 *man/supercell_GeneGenePlot.Rd
4f619f7d6fbcaea8a73bea2dcb67c22f *man/supercell_GeneGenePlot_single.Rd
614f67011a1289185c35b8e09ebeb80a *man/supercell_UMAP.Rd
528d5d89318e5ca198bf93d03b83878a *man/supercell_VlnPlot.Rd
40b1557e44abdf4b2a14550e2ef34a64 *man/supercell_VlnPlot_single.Rd
9948e0afc27856c0a4dbbb83bd2e3bc2 *man/supercell_assign.Rd
b6e9168353290e6a7d738ff528b8b0fa *man/supercell_cluster.Rd
3bfcdd4ecbd40059b3300d5285972df6 *man/supercell_estimate_velocity.Rd
03afb2ad86a2080ac41c773528145198 *man/supercell_merge.Rd
85ecce2dc28b252bb25e209a97ccc4ae *man/supercell_mergeGE.Rd
8773e8f34cd712556b8f4b29f8bb112d *man/supercell_plot.Rd
a032bb48ff2d067fa64190ee8c16d802 *man/supercell_plot_GE.Rd
aca2a37ba7ca7293245a2dfd03f50224 *man/supercell_plot_UMAP.Rd
944bcf9afa12abbfcb0d52c0045a4891 *man/supercell_plot_tSNE.Rd
5daf12bc01e4ddec733c443e2df11bfd *man/supercell_prcomp.Rd
b7a9135ca2897c63792e234aac1e8534 *man/supercell_purity.Rd
5b61333c9e14a9ad0c99110f9943446d *man/supercell_rescale.Rd
3646e4d97978611ad23f9962f21524d5 *man/supercell_silhouette.Rd
faa0f00be5ab311fd34f800b629d40eb *man/supercell_tSNE.Rd
2ead7c0ae53488554dad2e3a18c16605 *tests/output/SC_GE_first_10_cell_line_gamma_20.Rda
af20d49da45f75343bea804f587e79e5 *tests/output/SC_PCA_cell_line_gamma_20.Rda
25d8bb9efb0307108fadb3a3710e84db *tests/output/SC_cell_line_gamma_20.Rda
2111268e9d391a7eb3a151e96fb3b374 *tests/output/SC_markers_cell_line_gamma_20.Rda
b2fd35cb261c4bc0adcb2d6900c01736 *tests/testthat.R
f0d3b9c653a5ebe783bc443765f310c8 *tests/testthat/test_data_load_and_manipulations.R
884ea2185c2aaf55dca61904ba574798 *vignettes/a_SuperCell.Rmd
f1850f17215432e477897e3837e23a98 *vignettes/b_Combined_vs_independent_sample_processing.Rmd
