fceab62d36a5fdc09b532740f729590c *DESCRIPTION
8b54e5a89fbda3af5e077053d40bec76 *NAMESPACE
1eabf37b75f0b3a282799c47d0f8e5a1 *R/SRMAResults.R
4e31da4fa06021ad3c5da574e77be027 *R/amp.spec.qn.R
ed48067940516e518d19fe88dcb84b74 *R/calc.ll.R
8c82ac4b6763c85b5396ac739b815345 *R/calc.post.2.R
f7cb9428faaa5f595e86676abe19dc67 *R/calc.post.R
7ff6762c537130cd46b7ad9f2efde794 *R/calc.pp.bp.2.R
6de24211b0c8629a747569d7932b9055 *R/calc.pp.bp.R
e01dde853b0913ebca2cd234280d93cb *R/calc.slscore.R
c8a18d94a3b7430e2a19452d287c877b *R/call.genotype.R
7130c73337c89c34d270d03bfaf89dbe *R/call.max.R
25862aa7e46242645f9544e3bc79d633 *R/call.ref.base.R
f35087bb380234b6a3a890a560b64e85 *R/check.footprint.R
d540b238d25acf8bb8552cee090d9f59 *R/complement.R
02988a6898e543be4190f9f67b646108 *R/correct.lr.R
1501cf917e89282013e25d22cc33e040 *R/correct.lr.singlebp.R
df7c57924cc55e2749100cf0fd58972f *R/cross.chip.R
993c3872fff4d8531bb1908d9672a95b *R/explore.qc.R
d0654ef2f1893744e9063bd752d0d0cb *R/find.badamps.R
864b1654811aea709cb7dbe8f6ecc265 *R/find.best.fit.R
6c54b2496ed17190c3dce439e12b5021 *R/find.indels.R
cb4a7940232c24da91034857e9f3bc42 *R/get.delta.sigma.R
b5718b5adc4c5246fa2db100cb12cd77 *R/get.delta.sigma.qn.R
527f8a2f5fd866566407e2909e1ff2f5 *R/get.intensity.R
488c24c469dca4e35ec4293c72d872f4 *R/get.qc.measures.amplevel.R
19360767065894092c9e6524362056da *R/get.qc.measures.baselevel.R
de8036f154b1344dcbf04edffd96ed73 *R/get.qm.R
4c44888f71650bc857cd4000eb28297e *R/logbase2.R
b08575b596c060ab2c51b620f2154118 *R/normalized.base.measures.R
3a289f7a2c8580e52a3a6e2fe6badae6 *R/position.post.R
78936947baca563d36ce773e1238cf7c *R/post.process.R
5d02912f05a45dc8c9827f22e94cc95d *R/qn.R
d2719c0f47689e3294e52a2b33543c97 *R/quality.control.R
8a0dba5c4e5dc2d04edd4613a4023367 *R/rare.variants.pp.R
ca6e451b2d40a603840516b5795ca488 *R/reorganize.datafiles.R
1d956a305f5923888a6959c2b339916f *R/single.array.lm.all.alleles.R
eb190f4e0c1fb20552b5933e7d834d0f *R/single.chip.posterior.prob.R
501b3a03095dc63ee9072248df0daa6c *R/srma.R
a4ee8434255827d7992ffcf970fc1128 *R/ssum.R
898107774cf29cb8e97122459141e482 *R/writeVCF.R
d50fb08026bb3f3e892a4827eb2db9dd *data/all.qn.rda
e32d019d750a177131143d91a71015b9 *data/ampmap.rda
d1b013d9f59e3dd08a9417f560e581ea *data/badamp.rda
139bb83f33bcb34cd288317c692d1b1a *data/celint.qn.rda
2e7455d4ad35e837d5abf52249473bd6 *data/datalist
a3ccabb759e89d0fda08131eaf34f65b *data/dbsnp.info.rda
2cc60b8c5b5e0ddffe41f6f63091236b *data/ref.info.rda
ec7b227736e13e388245a71c0e02d638 *data/reorg.dat.rda
85f8e2fa85bf0c20f4bf717a7abd7e8f *data/sd.adj.dat.rda
b2f23c95e54789a29aa416f8cecfba3a *doc/SRMA_Manual.pdf
e0480f2715875dde01f7d37628a788e8 *man/SRMAResults-class.Rd
24abd4e136af64f8e30489ba9b717b39 *man/all.qn.Rd
243be27b9fff84fedd5d6c89bc0f8d02 *man/amp.spec.qn.Rd
dc5f10228dea2856943b36d03738b732 *man/ampmap.Rd
923d6aca4a794be42774d35dbb074310 *man/badamp.Rd
8d1ce2c131cb35418249a2400430d341 *man/calc.ll.Rd
f5e987a758357a71496ec666762dfda4 *man/calc.post.2.Rd
23efbb285af3c92e8872f454a2bac210 *man/calc.post.Rd
c6f3e42009c000bb8c83dc9850c85fb8 *man/calc.pp.bp.2.Rd
31a9339824e16767191b917e7d0a6de8 *man/calc.pp.bp.Rd
9cfffa9e4524353e0ee01732d74bddb5 *man/calc.slscore.Rd
de2170fa49bad7ed245268e0590046a0 *man/call.genotype.Rd
843242f91d45f220ce26b1566e460705 *man/call.max.Rd
a3d612202ff1fc7c2981f8615704f8cb *man/call.ref.base.Rd
e67f9964d1245757c6db1f3e67ce518d *man/celint.qn.Rd
a0da32b90c8977ae7266e3f336ff4c1c *man/check.footprint.Rd
08af6b2277d7a985ffe6997eaff7e1bb *man/complement.Rd
74ad92317bd531abefe8734fe7a61d6c *man/correct.lr.Rd
88e01f35635d3c0053f2e784e89a4532 *man/correct.lr.singlebp.Rd
21265c3259fff4964800f93f5c4ee726 *man/cross.chip.Rd
bdf78c14eb946fdce630d8bd2c68f4b8 *man/db3.Rd
c95cead6d01a632c791bfa76b317b2b7 *man/explore.qc.Rd
02c0a04efd6dee4f28064f004fa7d7ec *man/find.badamps.Rd
504ef343e62e016f9b4f86d04655ca9d *man/find.best.fit.Rd
13901c456bd33c721b283f8ca948ea22 *man/find.indels.Rd
dabd59e83557375589d97a0d7d8e7e73 *man/get.delta.sigma.Rd
be9fab261f703e75d47255c15dd10397 *man/get.delta.sigma.qn.Rd
506ab18aefb5932777010f1a08ab921d *man/get.intensity.Rd
81efdf5f8b10e24f9fc6d7efed1ef461 *man/get.qc.measures.amplevel.Rd
263b69aae4ac08f4e3dbd7702635f51c *man/get.qc.measures.baselevel.Rd
d7756b1b6d9ae9bcee8c9b959b736f8a *man/get.qm.Rd
5d37f08bb66ecc72fc2eddc0ff656e81 *man/logbase2.Rd
013c13720e85cb1c1daa62209a19be37 *man/normalized.base.measures.Rd
5c0c76af0a7529d79fdcdd440127892f *man/position.post.Rd
8fce77883645615e40c5fa0ce6225c78 *man/post.process.Rd
cdc78086a272f0b76d030e646070ae73 *man/qn.Rd
f96c813c8ea89d7ab987126f0984c63d *man/quality.control.Rd
71f4c1219b0622288fb5ee506a9de58d *man/rare.variants.pp.Rd
ea6a88bc4645aaf11111b5c4f299af24 *man/ref.info.Rd
044f9a8c1e3e99bd855c4c3de6bfc043 *man/reorg.dat.Rd
dd67b6bd29702833d10e17563609bf4f *man/reorganize.datafiles.Rd
79e1e384047969eb0843cf05eab7c2a3 *man/sd.adj.dat.Rd
789681e007310075fc1383aaa539d056 *man/single.array.lm.all.alleles.Rd
f36081d45f38d9111c11e0fad1f4f7bc *man/single.chip.posterior.prob.Rd
70ce5475756baa9328171a5d8166a3ce *man/srma.Rd
f648b718bdb1499862e39a9dfa8e8f9d *man/ssum.Rd
84f4d572246d5ac03a4465b53ad233a7 *man/writeVCF.Rd
