2c15042d3ea7c175dda1c4cd2b2c5e5c *DESCRIPTION
11e03a4f80030e946af819dbdec6688c *LICENSE
a1430c050d98bb87dd8799b8a31185d2 *NAMESPACE
cd2e9380e0331779abed712f289dbd4d *NEWS.md
a8ca9e0cada2ba7f9ece0dc714d2cc55 *R/BootKmeans_func_20250108.R
df58398569115f146032b99ac6f5af58 *R/ClusterMatch_func_20250108.R
0d4b856d3047f9be7dc698839ba8f231 *R/CreateFas_func_20230321.R
d624df7fcd0ab8a1bcbdbb875c1c2c6e *R/CreateHpltOccTable_func_20221010.R
71b6e0f19532f4229e78e7fcea24ff3a *R/CreateSamplesFas_func_20230321.R
34c9284dad49b9597761601af89e18e2 *R/DistCalc_func_20230707.R
1457ebeb23682b2976ebfe4005bf2a75 *R/GetHpltStats_func_20200915.R
7e6a2b765a169393e1dc69ceed9fe4dc *R/GetHpltTable_func_20200915.R
039b6066644d1d0c586a635b708aa58c *R/GetReplStats_func_20200914.R
46957274e660f70b0c01948cf45bb198 *R/GetReplTable_func_20200914.R
7b453fb16f333f2027e375983a4824c1 *R/HpltFind_func_20230321.R
a0f2581ccf84734ae372199e77ba9345 *R/HpltMatch_func_20230322.R
aa3f30fc70593b370aff42e378ee67a6 *R/NestTablesXL_func_20221012.R
9aee8c2849627032cb62d254c48eab32 *R/PapaDiv_func_20230630.R
bded39b6a16d6adec43eb83820b43bb3 *R/ReplMatch_func_20230321.R
d4e0bec7423ab4eeea01b801ec376f14 *R/hplt_occurrence_matrix.R
4b18bd2fb645019696234c6526f5e7a2 *R/k_summary_table.R
229c3f003a8af637e9ba6b74ef368e85 *R/nest_table.R
238b6d2eb4167dbf2e79429f2b6c6782 *R/parents_table.R
3bd133932ecd607b6e51e58bee4b52c2 *R/replicates_table.R
7d626fbfdf3807df677649ab9d668fc3 *R/sequence_table.R
5720a79564fc7ebb3d537d449ebf56fc *R/sequence_table_fas.R
38bc46317b4553f25a753bcc3b5c1530 *R/sequence_table_hplt.R
48ac98881d7bf956c60de3dd377742e2 *R/sequence_table_repl.R
c779d42b4f7a40800dbe703c622c065e *R/z1_matrix.R
4815a1055aebdf1974bf642555390fa3 *R/z2_matrix.R
355c119f41caa6c9af049a8877365d07 *R/z3_matrix.R
67df4e9d7d8de4c68311c35dfb93fcfa *R/z4_matrix.R
2d660a5dadc63982457c8a1dffe7daf0 *R/z5_matrix.R
384004062be3af623a80c02cc33c8782 *R/zzz.R
bb1ff3e40103ccc239ca43ea6be1c357 *README.md
b04b03eb20972d6ad3c7d694cd19e911 *data/hplt_occurrence_matrix.rda
4d805dce342aa5736bfd0fd0788479b2 *data/k_summary_table.rda
b61975620b028c53e032605690c83d8d *data/nest_table.rda
8688a1db4a2cbc09fe57327798733504 *data/parents_table.rda
480fe83a822ecc01ef093405e675d4c4 *data/replicates_table.rda
82ff790f465556fa86b37d4d3f23719b *data/sequence_table.rda
afbacaef98d462db562cab89321539fc *data/sequence_table_fas.rda
1eacc5070e1ac1aebeb98db6d9d7cef1 *data/sequence_table_hplt.rda
9fbfc1dcade8e5177ecb3b3970ed73c7 *data/sequence_table_repl.rda
f6c65a71fb7884efb2a6a948fe85d8d5 *data/z1_matrix.rda
1add69103d5d80fb19786552b9f59f48 *data/z2_matrix.rda
ce794991e6061a324fac101b2b235dbb *data/z3_matrix.rda
721033d7d147da913f61aca6f48053bf *data/z4_matrix.rda
6b52eb17d997bcfb061aa99311ef1c04 *data/z5_matrix.rda
46ed5163e5164f909bb277ba2118dfea *inst/extdata/ClusterMatch/Kclusters_model_10_20250115.RData
90f1ed4956553afd9d87d69519ab0a3b *inst/extdata/ClusterMatch/Kclusters_model_1_20250115.RData
acf5550fd53cf0aaf2900c4c35fb8c36 *inst/extdata/ClusterMatch/Kclusters_model_2_20250115.RData
888e9c9b49730c197fb473383d1d02d1 *inst/extdata/ClusterMatch/Kclusters_model_3_20250115.RData
88d66e39581e1349b407cd81af4ab89e *inst/extdata/ClusterMatch/Kclusters_model_4_20250115.RData
82c2ae381903a438b5ae4e56bc0b3e83 *inst/extdata/ClusterMatch/Kclusters_model_5_20250115.RData
84d7b00bb831e5b5a4604cb0afe52f23 *inst/extdata/ClusterMatch/Kclusters_model_6_20250115.RData
37e2c84937224c606b6ee3c750060259 *inst/extdata/ClusterMatch/Kclusters_model_7_20250115.RData
76b5be11a7d1908057e6382796a89582 *inst/extdata/ClusterMatch/Kclusters_model_8_20250115.RData
e4a36be7fa4d378f6fb9b3aafeb54bf2 *inst/extdata/ClusterMatch/Kclusters_model_9_20250115.RData
4b15e0dfd972d12e54db5b9aee4297f3 *inst/extdata/HpltFindOut/Haplotypes_nest10_20221018.Rds
0625e0b1c558c5d8ad67c9cfc552117a *inst/extdata/HpltFindOut/Haplotypes_nest1_20221018.Rds
dd30dbe23127aefcce2e9f559827efb8 *inst/extdata/HpltFindOut/Haplotypes_nest2_20221018.Rds
0f39c844876c2dbaa1817ca21540dfa0 *inst/extdata/HpltFindOut/Haplotypes_nest3_20221018.Rds
eb28ba53930f9b65ce9cf8a86ca5f029 *inst/extdata/HpltFindOut/Haplotypes_nest4_20221018.Rds
0a88e79eab30b0d0bd6e8d89da6078f0 *inst/extdata/HpltFindOut/Haplotypes_nest5_20221018.Rds
bc7cf360f030aeb4d21792a3ce0a09d2 *inst/extdata/HpltFindOut/Haplotypes_nest6_20221018.Rds
bd3009bb88308a2d704ead6a1cc838c9 *inst/extdata/HpltFindOut/Haplotypes_nest7_20221018.Rds
e4580bce249e05a34d66f3775f47d472 *inst/extdata/HpltFindOut/Haplotypes_nest8_20221018.Rds
eeb8431112a750161eddb6e499292c75 *inst/extdata/HpltFindOut/Haplotypes_nest9_20221018.Rds
7b81441f641174e60ff7f62f70c15752 *inst/extdata/ReplMatchOut/Repl_set_10_20200915.Rds
9a68d4386a82655ee961e48dcc0784dc *inst/extdata/ReplMatchOut/Repl_set_1_20200915.Rds
ecb318d569d9f1d17b1c63b2cec26835 *inst/extdata/ReplMatchOut/Repl_set_2_20200915.Rds
05ac2b308b01f5e5ec846854f3148991 *inst/extdata/ReplMatchOut/Repl_set_3_20200915.Rds
e39648a64e7fed9bb9ddab025a4ce47d *inst/extdata/ReplMatchOut/Repl_set_4_20200915.Rds
97aa947f79bfae66e58248c5319933e9 *inst/extdata/ReplMatchOut/Repl_set_5_20200915.Rds
85fba66e14c5d6a4435522704c332594 *inst/extdata/ReplMatchOut/Repl_set_6_20200915.Rds
3605c65784c0c78b65016f78075f3387 *inst/extdata/ReplMatchOut/Repl_set_7_20200915.Rds
07e8c3b3ce4be8938950c54287bd1ac9 *inst/extdata/ReplMatchOut/Repl_set_8_20200915.Rds
7250b7e328c07e0cb10720fa311ff42f *inst/extdata/ReplMatchOut/Repl_set_9_20200915.Rds
89bd072c12db894f1fc64ef3f45dd605 *man/BootKmeans.Rd
f686ca5556b9f0be7f6cd12f7ce04479 *man/ClusterMatch.Rd
96ed250d8c204af5f49384ac8b400b42 *man/CreateFas.Rd
d1bf7ae9517b152d663a4415ead153b6 *man/CreateHpltOccTable.Rd
2fc1a024d958e15dfc3ad03b72cb4385 *man/CreateSamplesFas.Rd
8db308157c789283123589b55d394046 *man/DistCalc.Rd
85b45613cec039f1dc3fe49b4d8522c4 *man/GetHpltStats.Rd
8003a5b9c4dbb37ee5ebaf47964cff78 *man/GetHpltTable.Rd
38054837b5e1dbf2b38eefb0039e4e67 *man/GetReplStats.Rd
afeb65a9e28ab01b93c88c02e68c8411 *man/GetReplTable.Rd
feeaa2a2a0ecdd395a64c034066bc4a3 *man/HpltFind.Rd
cf466f126902a8c3e075896bd5a646b3 *man/HpltMatch.Rd
f85bd05a9b4d1583c3c10a6f3317a551 *man/NestTablesXL.Rd
f1c2c24ad6a271a0f5e06a198ca5eb59 *man/PapaDiv.Rd
72ff86cd5672fe25afc0d431fcc36ad2 *man/ReplMatch.Rd
d1da8f9ff6860f6a2d4c94fe1ad29a6b *man/hplt_occurrence_matrix.Rd
01ca8d322b0647b81ef7331ef3370cda *man/k_summary_table.Rd
105e107e7d6af49686d44bdacbdbb0b0 *man/nest_table.Rd
946c54ac38a9e17d02f0343c32d0e72b *man/parents_table.Rd
a22110713b3efebdce143fe582480567 *man/replicates_table.Rd
723c99966e8ab01a2dde29296a8fa3a1 *man/sequence_table.Rd
ab05b355404c30658e1e09ec6c558270 *man/sequence_table_fas.Rd
d089ab6dc2cde27dd6e75dbe946dfaea *man/sequence_table_hplt.Rd
cb66097f28dc43c5e9995047030bf9af *man/sequence_table_repl.Rd
7cf71adfe223ac61067a0f8726a78952 *man/z1_matrix.Rd
dcd1b23a3efb5b5ddbd6301ff6b2dd35 *man/z2_matrix.Rd
ed5a48b3769bd6761b6176b7d10474d7 *man/z3_matrix.Rd
6f8170d48a2db57c4da7e2bea8c0309d *man/z4_matrix.Rd
444f1c5cfa2f788b91a94a18309bde31 *man/z5_matrix.Rd
