35c44bd50b1dd934d3fb05c488377a81 *DESCRIPTION
2bcb032e82d666106fd0fcf004934fec *NAMESPACE
aad87285438601553139f4dcffede4de *R/ancRECON.R
ccada179a566120a0448142b00e9b179 *R/convertPhangorn.R
45ded8577677596c96e93dd8d13706e5 *R/corDISC.R
81029b7938c269488c43573c0b49fa63 *R/corHMM.R
bbb59a06426a0bc2840e15345b9da1db *R/fitCorrelationTest.R
fe730e242cf1a788c735dcd03bf29a62 *R/makeSimmap.R
daeff8d4de1eb8d779d7c24092de038c *R/plotMKmodel.R
3c723f095c37261722ec9b44cc9c5940 *R/plotRECON.R
795be9241b35e528f5a51804f55ae446 *R/rate.mat.maker.R
4972ba413ce71863c67c015508d1a37a *R/rayDISC.R
ad8af9a093de1b9f325edcb69ffe2f1f *R/testCode.R
f49bee5dc9a3e4502b0833f6b81db061 *build/vignette.rds
b6961c6dd5095d1e485646c07ae8d48f *data/primates.paint.rda
100b928bab150149b4cb4d4d46dcbb08 *data/primates.rda
4a9b42f6e7d78c9949386dcdff63d79f *data/rayDISC.example.rda
6339d029c5684076f48b29eca05d5ace *inst/doc/corHMMv2.1-vignette.R
e15f5a678daf36e1df5b8547077dceba *inst/doc/corHMMv2.1-vignette.Rmd
d40a44d9392f5f7881a457669772796c *inst/doc/corHMMv2.1-vignette.pdf
1b0c4bc750620e2eefaf7e258c014133 *man/ConvertPhangornReconstructions.Rd
38120abcb58ae08f944ad4fcd4e27cd5 *man/ancRECON.Rd
a618b3b0c084c6844a749678d1fcec6c *man/corDISC.Rd
00f408e1671e9202c32e6c67cedad920 *man/corHMM.Rd
0c7cdba267b1fa37f00f4974d8312db9 *man/fitCorrelationTest.Rd
20a1e6ddcfe7bc6e771e15afa0ebf9fa *man/getFullMat.Rd
37135cef5b9d90054191e80aa53dcf0c *man/getRateMat4Dat.Rd
a58eb526ab0d11e88a67005d3fa63e06 *man/makeSimmap.Rd
3a852222e1d252e59ae30f3c6eae13c2 *man/plotMKmodel.Rd
ea6de2c957903e9a570d4cbc03719aca *man/plotRECON.Rd
e5f4e5e602dd8118bec3c20a91842218 *man/primates.Rd
046b79e19ebb2c9b988f3ee9f287b4ea *man/rayDISC.Rd
59c60786146a44865dd0f49dff4a7221 *tests/testthat.R
b1cff229bcbbab46503fd6589788111f *tests/testthat/res_old.corhmm.Rsave
9cec3fb5a6247afb81d306b5687f1867 *tests/testthat/testlikelihood.R
9622200c0f754e9fa40b324d8d9b84db *vignettes/corHMMResults.Rsave
e15f5a678daf36e1df5b8547077dceba *vignettes/corHMMv2.1-vignette.Rmd
647c867d23675cd059e7f280ff117a86 *vignettes/randomBD.tree
260828b26bd8de2ded08da86edc3109d *vignettes/simulatedData.Rsave
