da5eb3002cca3a435beeddeb8409bd99 *DESCRIPTION
f1ae7e7c3fbb6b5959c906380ddc7b33 *NAMESPACE
d35120c970032c0cdb75ca68d065e803 *R/RcppExports.R
5b48af02474463541b32c8d153c3f4a0 *R/align.clustal.R
9b41e3543caab97e111e130738b93cd3 *R/align.folder.R
2bc97f862d14c2d2bb705166d92c607d *R/align.mafft.R
8ed7a8675e6d203c9d7c6fa4e80c01c2 *R/allele.freq.format.R
8a0759839a86c6d569614b651429a043 *R/allele.freqs.R
5bc6fbbe3ec9d77704e950408ad0b184 *R/allele.split.R
dd6086e16d65b164cf39178d429f654e *R/allelic.richness.R
46ae5959ac59d8143d01e74d071136c4 *R/as.data.frame.gtypes.R
69558091e91e58179c0129f71deebb83 *R/as.dna.seq.R
ac4fcfcb1b5ee695db6bf76f118181e9 *R/as.matrix.gtypes.R
fc40de65c77a5cd5cec0b6f5945c13ea *R/base.freqs.R
df6f2bad5aa1374d8e8004afddf2532d *R/check.genotypes.R
f55741c6945a2d0ff84c6ca8aee09334 *R/check.gtypes.R
4338d3b14f58004aa3506c6e820cec19 *R/check.seqs.R
9f874051d8eb9dfb824de007e4c91ef9 *R/clumpp.run.R
c99c66d88d5be3fc6c387baff9452cbf *R/create.consensus.R
7fc58c74a47f21e7da6ac1b316e4becd *R/decode.R
82dd8be1931f399957732af813a14741 *R/decode.loci.R
cdaf73fdfc2657a5570701cb550cfcc1 *R/decode.sequences.R
2d497b3887df2c85c400db0745156641 *R/decode.strata.R
ca91751d888329da5556cf07649131cb *R/diversity.R
044ad4e994a5ba8622403e85eb3e2cc4 *R/dup.genotypes.R
80cc542b0177ccd38c87d190f3cc1fb7 *R/exptd.het.R
8c62a50fc5e680212129f6f36505cb15 *R/fastsimcoal.run.R
966c97a75bbaaacc4df521c797a2b2af *R/fastsimcoal.write.R
bb1903d9212d67d3d997286ee8837e4b *R/fisher.method.p.R
f687207ad7302feef02a964b0a801644 *R/fixed.differences.R
07777dc0f92abe9c78dd065f63cbb2e9 *R/fixed.sites.R
6ce497c527993db298c953e1f72d4f4c *R/fst.to.nm.R
3815d8d4589e8cf3fe221a6d52dd618b *R/gelato.plot.R
39740bd5ae8b579505a7980e5a914df5 *R/gelato.run.R
31843eca697aad0c16e0790fe34bca94 *R/gen.data.from.freq.R
ff7acbb7615eb45a0e8f9a2e670f9a96 *R/genepop.run.R
0dba21bb669d711d2c399e01f88a3f7a *R/genepop.write.R
698886364bfa8f511a42720752aecb4a *R/gtypes.R
6e60aeed909ad0ab856ccb8148f511ca *R/gtypes.character.R
e8e5d0d58bb4dcee7c9c49f053963beb *R/gtypes.default.R
aed2a95e4c2e2746a0ecbd3a65d3a52d *R/gtypes.list.R
c804141aed97ec49e177b014e920b3b7 *R/h.stats.R
e4536e77d095500b0957d81ecd31aaf8 *R/hap.freqs.R
f695e81ffb2a70e391caa11b8a8fa33e *R/haplotype.likelihoods.R
d767d118420e5008b173222990c031bf *R/haplotypic.diversity.R
48ef408b520d0005bda80a1080ac0904 *R/hwe.genepop.R
7ff01fb8ddc6f48e03b5bb2d4f5f1c5c *R/is.aligned.seq.R
73eab25866eaad81dc81f611c835f11c *R/is.diploid.R
e39a3c39a56987d220d984418039f24b *R/is.dna.seq.R
bb1f4026f4f49306c876215e737a5a6e *R/is.gtype.struct.func.R
ba1c9ffad9a6e9d2ffed482304e17a9f *R/is.gtypes.R
7006d31f58d84aed4a173dd0ed7c3836 *R/is.haploid.R
847c82990204047f8df2d16123ed1455 *R/is.ti.tv.R
123270aedbf5754bd33f72d812b121ef *R/iupac.code.R
db9a8586ef7537b4909f7da087de4a59 *R/jack.hwe.R
a80dec73f599faabd1353ff4d2e2fc0b *R/jack.influential.R
6c1c29ff283826b970764932145f3eac *R/jmodeltest.run.R
4e1a575fd7a70011f55af90b44e31df5 *R/label.haplotypes.R
cc8c735c66215811e8d0499742074c67 *R/label.haplotypes.default.R
249a1317f88482fbc2dd851452c0bf33 *R/label.haplotypes.gtypes.R
aabe958bf83907e3da942e6d8c473746 *R/linkage.genepop.R
195194ac879646cacf4779c28ff72d5d *R/locus.cols.R
7ecdeefe4e00416bfc9626cbb8fa54c1 *R/locus.names.R
e1e13b9adb02e744ec5461fa9ac46471 *R/low.freq.subs.R
3b7933419eb130e6dd944ea8cb192254 *R/merge.gtypes.R
5e74b5512fb28623e6d4e18e906a49a8 *R/most.distant.sequences.R
d353042d4168f8a117d322509c5207f2 *R/na.omit.gtypes.R
a83731a950e2a694d70cff9e9473a068 *R/nei.Da.R
1afc35b093de7ee78162a45c8b9d18cd *R/nucleotide.divergence.R
f0fcde7d2655617ebdede78f21ffd232 *R/nucleotide.diversity.R
2c8b9c4eb397965d0b2e77f799fe5f82 *R/num.alleles.R
e0b0e96901154f415b092b1996eecbf1 *R/num.alleles.shared.R
88380504a9fe152ea99f3fc89389a4c7 *R/num.gens.eq.R
c89a94679c378a689e3035c0914ce324 *R/num.loci.R
090bc1310b8a97e5a8789f5b7aa68be8 *R/num.missing.R
4e85f42b779dfecaa4ea8ceb111032de *R/obsvd.het.R
650e9559390428ccdc5f1420c50d15f6 *R/overall.test.R
6489b07ac8fc66feaa9f59a1efb3b33a *R/p.val.R
ebd281f912e590528e518b2b67e10d7e *R/pairwise.shared.loci.R
70e8f0647754dda6610997db96fce97c *R/pairwise.test.R
dc88735b4475c34312a7651a901f2bd2 *R/pct.unique.haplotypes.R
ca62b2a2bc5bc0be3fa944030d088caa *R/phase.filter.R
6843cc85256a256e5f2fa884f34a13db *R/phase.posterior.R
41442048a757761fb158eeaf09e1ba6a *R/phase.read.pair.R
a8522cd3f417123f489291cbdbee21ce *R/phase.read.sample.R
a043bdea688d4e9d471ce0bc0e8a9769 *R/phase.run.R
b524a2f1059ae42ff56b38a1295abf36 *R/phase.write.R
e4dedb63d213a01b749cdf786498b961 *R/plot.jack.influential.R
a46346d23805365ea401fe057946d9ef *R/pop.diff.test.R
52c7627b206ee909ee247c894b8c4ec3 *R/print.gtypeSummary.R
59254f783ab1955f6c6f80a6e8b9ed8e *R/read.arlequin.r
12c426e65273b0328965d6d59296cdc0 *R/read.fasta.R
2d863d57999e950a96d72b6207a33ff4 *R/read.gen.data.R
4b343d99331b5febb85b170e27f85185 *R/read.mega.R
12f69c5d96b4fad70c455ad55728cbf3 *R/relabel.sequences.R
8de18ddfafdac19c2e58fd7470c84636 *R/restratify.R
b805e0551b6e6ed874bb5949c7ea4174 *R/sequence.summary.R
23d0e4f7f046f19b650c7e2666a45e7d *R/shared.haps.R
a7aada968295af6b52173bba0b92c0be *R/sim.gamma.haps.R
a31f5cdce92f99ecf509326c8b7ff319 *R/smry.by.locus.R
ef91664cff7f173e1eee1d5b166df0ad *R/smry.by.sample.R
ea4f64c61af5369facfa2eecc388100d *R/stat.chi2.R
cf23d9dbbf3f1f46b0734bf48b8e9ffd *R/stat.d.jost.R
1492acc5959b79a9711dee452f57a8a3 *R/stat.fst.R
e112540b5d78401edc34b7f1f94cab4a *R/stat.fst.prime.R
18668af3e4c0257c2be363d9b84cd4ba *R/stat.gst.R
0fe341ac31a30b2fbce35c35bfd80854 *R/stat.gst.dbl.prime.R
123a4916d7089c9da3cefdedc489cec6 *R/stat.gst.prime.hedrick.R
95571430717a03c8a6be7a7b5bd3fd59 *R/stat.gst.prime.nei.R
fcfc75361b3b2591609bdf4a11db69b6 *R/stat.list.R
742eac5682a2fc69521eafcab6dc64cf *R/stat.phist.R
5045fda495e5ab13cdb4ecfac3091459 *R/stopifnot.aligned.R
841c4af3770b804e697f21f116656652 *R/stopifnot.gtype.struct.func.R
db327c78b2baf8478d8f5c1b39c09d6f *R/stopifnot.gtypes.R
235aa5e7e21419a9248329e67d154034 *R/strata.pairs.R
23f062954dc81af7da5345d02af38a5d *R/strata.split.R
763777cfa5cbf8bcf77c559553812b14 *R/strataG-package.R
ac6938a9795d23c2fa45132a092c22db *R/structure.evanno.R
59b51d125bac91377359d82206222fbf *R/structure.parse.q.mat.R
6722d926605ab9c89155b58b3543d250 *R/structure.plot.R
acae93619b5e46aa919e3d5ca7f07e67 *R/structure.read.R
972732727e95753aa3777952013a29fa *R/structure.run.R
515e7847543fb6dd6c7d00eefea94058 *R/structure.write.R
31d7ddc90840ae415b93df4aa59a6099 *R/subset.gtypes.R
89e740f343840aa762bcc8fcd03171b8 *R/summarize.loci.R
1a567ed7ebcace72901e18a592f96e09 *R/summarize.sequences.R
8eef793b1d75bb423326fdfaf4d54aaf *R/summary.gtypes.R
cb9a92438742f74e4e20997041bfc0f0 *R/sysdata.rda
476e5950e5e1e9bba72a282c89b60704 *R/tajimas.d.R
304051b37a9dc5fe835fcdce4ced3ede *R/theta.R
114beeec4f38d6dd6a35e04f7ddf03ba *R/ti.tv.ratio.R
86920af446d85da609856551bcfa9204 *R/trim.ns.R
3113498de4b68c220125f62c2f405c33 *R/valid.iupac.codes.R
1a24cc2c571966fb9e9f732de8b8cc3c *R/variable.sites.R
30894101f3758b3afa3cb0774ae77a5c *R/wright.fst.R
ef17fc38bcb643966ccd3315f4c07aff *R/write.arlequin.R
be1246a5d31345768508fb6e9aa9f7d7 *R/write.fasta.R
4a256bdd6900d80d8db85c9f92413d2b *R/write.gtypes.R
0d7d7db88d45f82ecac339b442ade19b *R/write.mega.R
a812f3724a4b151143665d2e6a4469f2 *R/write.snapp.nexus.R
2665b0dad83bbc83f3ab5862516582ea *data/bowhead.snp.position.rda
eda94674fa43de5bf2079c442c65fd6e *data/bowhead.snps.rda
c7b883e4c8cc458c8f9550251ffe2d5b *data/dolph.haps.rda
2b85d7d52533b615d9c43e44aec65f42 *data/dolph.msats.rda
de42d316c0f9025dc160c13af140eb7f *data/dolph.seqs.rda
aff2ea92ae5d1b68e9dbb07e3638bb91 *data/dolph.strata.rda
366d6bbe7683334b8bc29e85ea0a99bb *man/align.clustal.Rd
7c9ebf082d610c6a5c90a11afb593ff2 *man/align.folder.Rd
e9701ac6887a62613ab21d05146a1813 *man/align.mafft.Rd
839316f0621ccdca90b095bcba6c7d70 *man/allele.freq.format.Rd
c1a89f1dd5cb5eb380dc5c3f6d2c952f *man/allele.freqs.Rd
27d7f83ff610af6a93aba86dd2aa78b4 *man/allele.split.Rd
246ec26032c769bf33eaf2c0ed60e67b *man/allelic.richness.Rd
2e3e749ab7ab0a2c2b899ddce2a570d1 *man/as.data.frame.gtypes.Rd
c13c38af86e590715979fc6eca780a91 *man/as.dna.seq.Rd
c54711d5452abc4e94308fd698aa779a *man/as.matrix.gtypes.Rd
2f2e9375c91f4f945da433c9577ff2c1 *man/base.freqs.Rd
7b88cd0604f2642f491d5cb7bdbb7bf3 *man/bowhead.snp.position.Rd
dce5b85f965d4db6ba0f9e02f7dc99f9 *man/bowhead.snps.Rd
ca7dc69ceb965eb202e54c370a9b0d06 *man/check.genotypes.Rd
5068e0e220f91489652692fe408a475a *man/check.seqs.Rd
29aff94f962f9495190f40a1c8d50b7c *man/clumpp.run.Rd
d15c08f21dea929ea0636c238e7be776 *man/create.consensus.Rd
4c7ccd9bfb1be0f721a6d6795c6f091d *man/decode.Rd
a6384903f481edf0eb34a3ef5ff05b24 *man/diversity.Rd
9809d754e48b84b46d7dbd725c051bde *man/dolph.haps.Rd
789b97c343382ccc810a45d542e362b0 *man/dolph.msats.Rd
32594aa54bfa06c3805e85d03a9ea7ec *man/dolph.seqs.Rd
a6f86c7558fae455682deeb5fdbae428 *man/dolph.strata.Rd
32b4f38e888badb4b67cc2a33b3a077c *man/dup.genotypes.Rd
cb5764fc351d8dd2935d9ab27edbc8d2 *man/exptd.het.Rd
4caf98313c9327b486f7f41485b9affc *man/fastsimcoal.run.Rd
9788128e7a865105ffde06f6e8d2aedc *man/fisher.method.p.Rd
f07d5def06ce6128ea7fef906dbf88ed *man/fixed.differences.Rd
3319bdf46d150a8042d9dbc1d526f684 *man/fixed.sites.Rd
bf402aca2c02d34ae3c2304b3508ac54 *man/fst.to.nm.Rd
d56e3efe787c0e46e0302895a45b5627 *man/gelato.plot.Rd
3d41184ae09a3470a8134da37f1d54b5 *man/gelato.run.Rd
6cd33bbb2ada642e76a3b054018fde06 *man/gen.data.from.freq.Rd
c88aa7fdfceeb4b48f5ee6dec709fb50 *man/genepop.run.Rd
a51b8297306edba488ab3cfe4b3104b6 *man/gtype.struct.func.Rd
cb38b5c6b772191424c0d4459e03eeac *man/gtypes.Rd
bb75cc03306c8da240e6a68ea011c305 *man/h.stats.Rd
9a0388ff810db6dd18efff2d7cb769b3 *man/hap.freqs.Rd
e3d30d8ccb98f78ea11349b42eda062c *man/haplotype.likelihoods.Rd
0dd7212504734452967dc36c1318f047 *man/haplotypic.diversity.Rd
545d6c85676389c129e551a69e687362 *man/hwe.genepop.Rd
28b87deff190c8122f726e7e4f4b0bb3 *man/is.diploid.Rd
a494721162ec8904d3fe5e7ae67dec92 *man/is.gtype.struct.func.Rd
f4c62a97521be6f4eb4518e57e4614e4 *man/iupac.code.Rd
6c07856c7cc58fddd9b1669e3c0da33e *man/jack.hwe.Rd
30598884f477633ad3a16efce8aeadce *man/jmodeltest.run.Rd
eb16f8a7692eabcbd1e80378c9935030 *man/label.haplotypes.Rd
02346f71fec434f07ddeae007ae79970 *man/linkage.genepop.Rd
dc80a277cc3ab4a2da1100ed40cfcc0c *man/locus.names.Rd
dc64d9537c92d631cfc1f0e70436c84f *man/low.freq.subs.Rd
fa19510d42f328fab2aaaaae96c25048 *man/merge.gtypes.Rd
ae2fd01e2b08c3459f4bb7225011b6c6 *man/most.distant.sequences.Rd
868ceb475588ff2bde5cb7215c98ef04 *man/na.omit.gtypes.Rd
aa40b44f0d2f6d71757d7384c3b596a7 *man/nei.Da.Rd
bd90dcebf0d989b90bb8eb9c4061468a *man/nucleotide.divergence.Rd
e6ba846acdbd6466960f1f8f00d0bb91 *man/nucleotide.diversity.Rd
e6a5c5954f15181cba4259c4c259a492 *man/num.alleles.Rd
f11fb717de2ce900e257a20890d2f1b4 *man/num.alleles.shared.Rd
43fe9eef235f6685368c9e676127a03c *man/num.gens.eq.Rd
db1933380dac0a4e6e4adf7238d20f28 *man/num.missing.Rd
f6b02959978fed19cd330da355f33103 *man/obsvd.het.Rd
32eefb9f1777d890dad1ae09c8da66b8 *man/p.val.Rd
a96a3d26a4e561810a1ee0fc19da16d5 *man/pairwise.shared.loci.Rd
eb4dc77cca5c1b9be52683a507df5467 *man/pct.unique.haplotypes.Rd
d7b17e0f23b52d1833410945de08ba49 *man/phase.run.Rd
be492db4a4eeaeef343b06647f3bc834 *man/pop.diff.test.Rd
e45c1d6ee971514ad108b4d60772d920 *man/print.gtypeSummary.Rd
2c3fc608d12860ec2361c7a050fd5048 *man/read.arlequin.Rd
a46b14dee33ab09103af164c860a4341 *man/read.fasta.Rd
cda8a8a5a874cfb7a943af81c1f5dabf *man/read.gen.data.Rd
045f3bd41ab0857719af337e85e027fb *man/read.mega.Rd
d022cc9a94a9b54bab1b7ba7fd4edc91 *man/relabel.sequences.Rd
44290f8116498cf5c2865da807aeea1c *man/restratify.Rd
825a6c5c3c6bf69f506efd1ef2ca0e90 *man/sequence.summary.Rd
0001f8536e66a5cc417c35a36816a4ab *man/shared.haps.Rd
987f793d8db92c38e2faed66ffefe698 *man/sim.gamma.haps.Rd
9d86ef3c71441e71118e23b72c157483 *man/smry.by.locus.Rd
06d9fc8357e6984abe5b0b3eea838a06 *man/smry.by.sample.Rd
02d68c86e07afcdcb762df6b308facff *man/stat.chi2.Rd
4edf0283ae4bcd860d0d9978c5c61cd5 *man/stat.d.jost.Rd
1b9f65914c16b657dae38d7e2770dd7e *man/stat.fst.Rd
63485ff05a8b21748c50c1c8e7c72b06 *man/stat.fst.prime.Rd
4c706c120051cafa5b1781a33e2e3bc2 *man/stat.gst.Rd
fb1f4cb3b52bfadf5363510c273965ad *man/stat.gst.dbl.prime.Rd
eaaa3f18ef7504b99d4af4d62e2a2c67 *man/stat.gst.prime.hedrick.Rd
2e4220ab28681586ed1df06e7ad0f27c *man/stat.gst.prime.nei.Rd
41d31012f2a9c34d0f1c460bc51836f1 *man/stat.phist.Rd
150762b7ab5e417759ec49d653b03abc *man/stopifnot.gtype.struct.func.Rd
9223c6d6e9c0f7c9635f321c0402f0fd *man/strata.pairs.Rd
b2a31208d60a7ca1b229f586b2b5c503 *man/strata.split.Rd
3d56b82a34fab8639f6662320de12c13 *man/strataG-package.Rd
93c648957cad0f31e94228380e113e9b *man/structure.evanno.Rd
711cdd54008aadb78c9368547d4d7941 *man/structure.parse.q.mat.Rd
d38212909cac108ea4d9746f19185e98 *man/structure.plot.Rd
6184d1b7652e044eb6a791c252d4db5e *man/structure.run.Rd
c3b434631396ba77c3f529c3014a6ab6 *man/subset.gtypes.Rd
b9a31761b71cd6f12c7cae59ed580d16 *man/summarize.loci.Rd
bcf8a3d581a1bc6ee89f80a822eb54e5 *man/summarize.sequences.Rd
ee887c1fa736aa3d99a4e937171ba7e7 *man/summary.gtypes.Rd
6c20706b8f8b5f7114deff478ee7ea45 *man/tajimas.d.Rd
94d7dc14dcc6f9cc9bf21001e14095a4 *man/theta.Rd
60b91dd3a6f692aa8092bcbf5c7df609 *man/ti.tv.ratio.Rd
20555f65dc820701485fc24e5021a552 *man/trim.ns.Rd
247f8e94f942c689ffa2efa844a454e1 *man/valid.iupac.codes.Rd
cd11110a2e53ea71f60db316d80317ce *man/variable.sites.Rd
2e5b22adc00b7a27d3931249833ced31 *man/wright.fst.Rd
9f06f0611b454b46214f6c0862e3bf36 *man/write.gtypes.Rd
02a31310a4253de39b62dbc41cde734a *man/write.snapp.nexus.Rd
d6d05472829337a3e494496a793c0acd *src/RcppExports.cpp
fa1184006b0d937cc4808197b41f5c67 *src/hStats_C.cpp
0daec130d2320567fda63b9e4f0768da *src/misc.funcs.cpp
40986be22948343a04fa466821d5ebaa *src/stat.chi2_C.cpp
49c0352fe4d676e72477eef542726d34 *src/stat.fst_C.cpp
0098577ac313101ad46efe28b3ea6162 *src/stat.gst.dbl.prime_C.cpp
d76c5813efebfb653864b49ca99d876b *src/stat.gst.prime.hedrick_C.cpp
e0e26c1ce0d7cf9bdf37de1c3cb12154 *src/stat.gst.prime.nei_C.cpp
99e882dbbaa37f3917acfd98d934cc54 *src/stat.gst_C.cpp
c4ecfd839729a6d56d4b859b13372083 *src/stat.phist_C.cpp
