6f49767e4663698f0afd0b9ee39ff086 *DESCRIPTION
664e9cb5f89cea30bcfe10ddf0a0d2bc *NAMESPACE
8cd6bbbb3e1983e53861adc050bc843e *NEWS.md
d92759e35142a40605fc358e193c35f5 *R/add_predictors.R
65d8622c3b73511656ea4b3b07707ed7 *R/align_ids.R
41708e927be0535817ef19d38b5c70e9 *R/big_cbind.R
6c9a33881c6a3de5c4c450705a84379b *R/check_for_file_extension.R
7bf0c6df9b02af8ee6fc8ccbf7eca939 *R/coef-cv-plmm.R
b3c95e9caf3d2acfc73e397a69ea87d8 *R/coef-plmm.R
df9268ddf192e0883c5fe9a2745b2f28 *R/construct_variance.R
04105229affda9b7d02cb35e46a20c7c *R/count_constant_features.R
5630be735cb85c946f44f87221010975 *R/count_cores.R
b4ce3a402f90e2d21739f8a6fb789066 *R/create_design.R
3b6a24854a4a46884b4597c423075cce *R/create_design_filebacked.R
d57409f6931cf276db2a49c524a98a6e *R/create_design_in_memory.R
2a16494919eba4c69dd26a20bdbffdad *R/create_log.R
88c432ffe34f4018254919617268f60b *R/cv-plmm.R
d0a977ae43dd84b83862e4e6ea2c646a *R/cvf.R
9d5ca5344c49b98260358a241126ac0c *R/data.R
7f235d43196bedd476bf7409f0857558 *R/eigen_K.R
ba4dba83adba3e14e7710659701f2f9e *R/estimate_eta.R
ba84056b3d7d759e52ef0dba0384cdaa *R/fbm2bm.R
fdf1548b472a97912e16840f9280968d *R/file_sans_ext.R
15c665f4bd96c0abcb33fee23edb74ff *R/find_example_data.R
521863a030d1d59c2bc4c23b096e09c6 *R/get_data.R
94d06f28b399982224ddf9ea2ff93df1 *R/get_hostname.R
53fb295cba72d74b706eb85f64e02e96 *R/impute_snp_data.R
5741838ca39fa2fd09d003c8ce2bd696 *R/index_samples.R
be9c452bb85f018c0f1beed8c1814eeb *R/index_std_X.R
8de2cb6ec673b8ad55325b0dcc7cdebf *R/lam_names.R
689b314066a4939fd2154289e54d4971 *R/log_lik.R
87b47fff2094a38731fbdfbc00b1636a *R/loss-plmm.R
714d837f6c96c63d99bfaface999d279 *R/name_and_count_bigsnp.R
fe5fe1e84683b79d9e3a42bcd5b8479a *R/penalties.R
9de02012cde4ea35ae5baf76cc0cadd9 *R/plmm.R
81c6ed8428029caede7a998a3a171e17 *R/plmm_checks.R
685e83d72c82ec662d96003fa657239d *R/plmm_fit.R
301c27fb3479a9d3877ebb93c500355d *R/plmm_format.R
466463f6677a3722cc798b00e7010634 *R/plmm_prep.R
e4350db1a8c335b7073348b88d7aabc0 *R/plmmr-package.R
569dbbca07986ee74b45919122c1123b *R/plot-cv-plmm.R
08abcde14701beff11d4f77c41c9630e *R/plot-plmm.R
4db20d34e8ac2b8847e25009eedde822 *R/predict-plmm.R
7a8040e0c7e5dbb9fd03bcf098c7edfc *R/predict_within_cv.R
93dcea24a880c6eff3917604e0707faa *R/pretty_time.R
0c77b808c0f321eed9e82582fb480f6c *R/print-summary-cv-plmm.R
d86b6ff9cb0ee6d84bf16896d85883b4 *R/print-summary-plmm.R
538f36526ac39163380d81bb9e210a98 *R/process_delim.R
9ec8a4134e10a4fe2368ffcf1ec66011 *R/process_plink.R
926f9cbae12fc6a9d3e3726c74aa8c0c *R/read_data_files.R
f8e8d1f5b8a23105fadf06b1c74e76ef *R/read_plink_files.R
c2cde1129e047e7f979bbda874019cc0 *R/relatedness_mat.R
ded6f15fbeb6fd6c731c719965a51266 *R/rotate_filebacked.R
44db413ccf526d643c1e378e9d86a4a8 *R/setup_lambda.R
fe2a9ba4b023e456453063f74e2d605a *R/standardize_filebacked.R
d3dffcc5423563a24beacf85f8648b66 *R/standardize_matrix.R
aacd5f0953718091d8de33e6aa371608 *R/subset_bigsnp.R
a7f8916ff9dfecbc27b7ef74782bbf01 *R/summary-cv-plmm.R
4652c59fd52ea4b530a70c080bf610d2 *R/summary-plmm.R
8d84250a2010862d67feb528f349ad7c *R/untransform.R
bbfdb19491e5a31e1765fdcd765d5377 *R/untransform_filebacked.R
d20160d7fca67f8a8e576a6c7dc3acc4 *R/untransform_in_memory.R
7ded1c1abb01b8ef4eb90287213ee6e8 *README.md
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
95988bc223d65933fef1c4cbef261282 *build/vignette.rds
7121accff35c31ff88eee089bbfd72a7 *data/admix.rda
891423b6cdd3c79accc2a350b9d3d6d3 *inst/CITATION
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7d29cd7068e35a337e64f1beabe324da *inst/doc/getting-started.Rmd
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d613bf67aa23088ac7f8fe07194a2ddc *inst/tinytest/test_plmm.R
3dbb7bbedbf278a3299a1b1cd0c13230 *man/MCP.Rd
4e0473e036fe8910ad88ed4af3292542 *man/SCAD.Rd
5457582082c1fc348a4c975473ba1c29 *man/add_predictors.Rd
2faa512b2448934de17bb71253f9ecb2 *man/admix.Rd
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8049f66005ff698ebb55ce3f95213da8 *man/big_cbind.Rd
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05fb4ba89774b2d12f5d8204fb4bb382 *man/coef.plmm.Rd
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385b3d0f487b80dc16f9717993c6ad40 *man/count_cores.Rd
2e0401782d8b1cea8c7ac5c5e061f2d1 *man/create_design.Rd
f551ffb8fee5e520feeb778d342b69fd *man/create_design_filebacked.Rd
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5fb77e601e4f6769ad3436e47c7485e1 *man/create_log.Rd
649a470a6b808d879df8ed39c43b7ea0 *man/cv_plmm.Rd
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aa74784b7adc87d15ee9c67da206f9ab *man/fbm2bm.Rd
cdc4aad8b6e2ec629ee59faf65f68628 *man/figures/plmmr_hex_sticker.png
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93585990fe154dc9b2c62bd72c14eca4 *man/impute_snp_data.Rd
149c5e310345541cbb34a123df5d1d96 *man/index_samples.Rd
3b8140cc7dc23e72e390ae0933361915 *man/index_std_X.Rd
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5ecebca591af81f00935eaacdd2fbfa2 *man/lasso.Rd
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25802ac49aaee3570da16279ff1f147a *man/name_and_count_bigsnp.Rd
8a387fea4c2962f1466f901da97936fc *man/plmm.Rd
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5f1311bd1c6582c09ce4895b2ca377ef *man/plmm_fit.Rd
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e134c27781d10e5af25a65eba998ae33 *man/plmm_loss.Rd
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2888621528e2d04b34d18440277c38aa *man/plmmr-package.Rd
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5bf85bde1639dd9b90b8876378af0b76 *man/predict.plmm.Rd
fad11b3c908d6b6fdcf9e3b0cad066ba *man/predict_within_cv.Rd
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4a4b014eee1438306d7ed7ba90f47af0 *man/print.summary.cv_plmm.Rd
98814146168ff2b70792f076e6afb201 *man/print.summary.plmm.Rd
8cc8983dab4c47535a2b68981876e16b *man/process_delim.Rd
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09388839ad7eb2e350376c8292f3a515 *man/read_data_files.Rd
537779ee245daf0fbc6a377f706c2173 *man/read_plink_files.Rd
6d62d143ba662f5d491faecfa7b7e976 *man/relatedness_mat.Rd
3e1bff9656015f06997d3607ff1bb294 *man/rotate_filebacked.Rd
737e985cf4b5a7b8ecacce3558144f18 *man/setup_lambda.Rd
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dad0804f6132daf7da0cb1de59dc0c2b *man/standardize_in_memory.Rd
83601686de9dd476ffafd60c4c18dafc *man/subset_filebacked.Rd
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9002a03f7709ff5a23a14a6264efb3a4 *man/summary.plmm.Rd
03e90f1c4d4cbbe71dd6189ecd570597 *man/untransform.Rd
abccfdb4d5c8107840b2caf759f1ab3b *man/untransform_filebacked.Rd
cbfa9095c6924286c1fab36d1cfa7287 *man/untransform_in_memory.Rd
b9acc33996425189aec49530f2c06456 *man/unzip_example_data.Rd
e36daf0e2bbc265932539e68a0221aca *src/Makevars
7d63cfb73145573685f48855ec3a1356 *src/big_crossprod.cpp
3f3fb14167f4be94353964cc947a6de6 *src/big_sd.cpp
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11638bd377b58fa7af6b598db23113dc *src/defines.h
4157ea22f0e5db9c39dc0d92739ba8fa *src/plmm_init.c
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6343d85cba11e26b0c756fe6eae12df8 *src/utilities.cpp
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35e520f0e02b16fe45add593b37a2ed5 *tests/tinytest.R
7d29cd7068e35a337e64f1beabe324da *vignettes/getting-started.Rmd
