9e14054b6885b41304380dbd20da5144 *DESCRIPTION
cae1e206e8c6dab464a2a752e74b5f4a *NAMESPACE
21b96a8344cacf95a2b4095a6c487ba2 *R/ML.RatePhylo.R
a079b7efd65c73ba24aa589b6add4433 *R/RData.R
d23c5815ebd84de6b02d55b97ac3d2ef *R/RDataTree.R
759ba3c938584031b1acbe890796f9a0 *R/RatePhylo.CI.R
a6e73e95337664492878a30272293b73 *R/RatePhylo.allCI.R
ed2053de4c1cea33abaae90194885ae3 *R/addFossilToPhy.R
d6be5a1825388e7c544df5f81775ba44 *R/allCladeMembers.R
327daf8509c3a981bc9ee14efda31210 *R/ancState.R
1a4422db4eb8e85f75726204cc832a77 *R/as.rateData.R
4eea3b73a02fc3f1d376c13584b7919b *R/as.rateMatrix.R
7f358388cbc7b15106d579b7b7674c25 *R/cladeIdentity.R
547256274d1dde0638dfd7252e1a341d *R/contemporaryPhy.R
1069a4bdbe71efc3e14603c5af9b6bf8 *R/dropTipPartial.R
648ec42c8b1ecfba860912c273adf47b *R/fairProportions.R
ac73b8bc4cec4fc94fd4ff6abc854c90 *R/likRatePhylo.R
1c44f8267122ffb2694e0b911eee0fe7 *R/likTraitPhylo.R
87890b8262807f8eceee7c5e301b88b9 *R/make.anc.R
d0208ff899116159d5cff307c0e5b670 *R/make.likRatePhylo.R
c1c146bf1df36544a726f749f2cd000e *R/name.check.R
4d36bbb6bb2d8f6d03cc6f74d52c82c9 *R/node.descendents.R
b977d216c4eef8569a5c873edd074d86 *R/nodeTimes.R
ad4c07712318b1ee6d1ca682f301ca20 *R/optim.likRatePhylo.R
e0bb0d8d8c27c77f2429642b7ac31018 *R/phyloCovar.R
8590ad9290da299b240bebbc1c03229a *R/phyloMean.R
06cc8c180bf1afa839e19266e4eae042 *R/phyloVar.R
5b8fe6b68ebdc93cc7a2355b59718c7c *R/pic.motmot.R
8bfd276356c274cd218ae88a9b7dea1e *R/plotPhylo.motmot.R
e18a504c2472b4b982be2643cf6469b8 *R/removeNonBin.R
74623cc51afe3e63dd67542b9323179c *R/sampleHiddenSp.R
eac5371f182ba5a72b3f0711b24714e4 *R/sliceTree.R
2df64943347b1cc593a36ba183ff1574 *R/sortTraitData.R
b0c6265f304754ddea6bafdabdd1894d *R/timeSliceSummary.R
90b50da90bba3aef592fef39d8777210 *R/timeTravelPhy.R
2b567504871cfce2993afb3f84ecf449 *R/traitData.plot.R
b07227d8ba5985ab172a96e6d6324b92 *R/traitMedusaSummary.R
63208a81fae4346f565eb555ef6e397c *R/transformPhylo.MCMC.R
c2449633ec37a38a5f62db87f9d124a6 *R/transformPhylo.ML.R
59bea443157a862fbbd6c669c97230ed *R/transformPhylo.R
77e55fb4319829f1fe9728b159cd50b1 *R/transformPhylo.ll.R
e090dadb146fb38608d516f80ae3aa05 *R/transformPhylo.sim.R
ea9e209cbc3cf0a9fec14cd58bc4da76 *R/transformRateMatrix.R
32647524a7cbf1a356610c10d6e4ab78 *build/vignette.rds
df5ddf3887de052637805be045100145 *data/anolis.data.rda
6ff9c4c78e8ea31405293d3da3ba7dbd *data/anolis.tree.rda
441744f812164877a345059ea1334936 *inst/doc/motmot.2.0.vignette.R
d35b318af066274b2edfaade1e07eaf7 *inst/doc/motmot.2.0.vignette.Rmd
e92c86610f564a76c80274d6aeb1375a *inst/doc/motmot.2.0.vignette.html
1692c514e050a2ad32d4ca2939df3763 *man/ML.RatePhylo.Rd
f254e3108768538f13bb9bc9ac2ac06c *man/RatePhylo.CI.Rd
bc165db9eb5abcfd4b3cda5cf73eee67 *man/RatePhylo.allCI.Rd
eca704764d3a682616b9a96c43f7ccf8 *man/addFossilToPhy.Rd
2d6596dff0f81474480db87b3319cfd7 *man/allCladeMembers.Rd
f8b92d2ac481b0389b46580362d4425a *man/ancState.Rd
f009b8faa0eda7e4b4dcdd8c0962f04d *man/anolis.data.Rd
678a7f9bb4f1e30ac29b64826077a2b1 *man/anolis.tree.Rd
31b58c4741930574024bba7657f3e6a6 *man/as.rateData.Rd
06b73957f337630e2f0de237a658b55f *man/as.rateMatrix.Rd
07a057b21302a9bf1f63a9728b0edb93 *man/cladeIdentity.Rd
988455f4974c606aa0fb25c6829dbfd6 *man/contemporaryPhy.Rd
5dfe107efe7013eef253137ceec48948 *man/dropTipPartial.Rd
3c43c3097a7857bf2457925fe1309f59 *man/fairProportions.Rd
3c97f194eb3be93ab605aa9cfc758dca *man/likRatePhylo.Rd
f6e707e74e6de3afc634a74a38ecb6ec *man/likTraitPhylo.Rd
cea754095d1422478a8f06519051913b *man/make.anc.Rd
343071affff54d3d7905d296a7988ec2 *man/make.likRatePhylo.Rd
ded40189d18a1838ef0a1ebf435234d1 *man/name.check.Rd
0c14e8a980f35f521c948ab13616558e *man/node.descendents.Rd
7a6619ada6215c6290f1aeac73024c3f *man/nodeTimes.Rd
b4fbc50fc7045f34355762447ec501a7 *man/optim.likRatePhylo.Rd
ec92099026128e9231988c3c3a92dd9b *man/phyloCovar.Rd
8be4a8ff6d96cea430adc27f3c540b78 *man/phyloMean.Rd
5edf705119e68d31e02d261d329094ce *man/phyloVar.Rd
2d44a2f5d00263f6e067ca79c1afa3b1 *man/pic.motmot.Rd
6d20c8ec954aedfedcb192276d145160 *man/plotPhylo.motmot.Rd
13413f0f21430c8512c052289837b808 *man/removeNonBin.Rd
6fb942ca7ff68b328f01f7630ebc29a3 *man/sampleHiddenSp.Rd
4c72d3593d4499dbc928e7426c59a3fb *man/sliceTree.Rd
6df063de5e6165060f84f03c8a58d1f8 *man/sortTraitData.Rd
c1f1d40499926a18244efe047fbe60e5 *man/timeSliceSummary.Rd
696c6e213b1006caeab66bbce56f7c25 *man/timeTravelPhy.Rd
310605318b6510b268fc7d3353b0637f *man/traitData.plot.Rd
477167fe66c30f85f9a822c9f15b1744 *man/traitMedusaSummary.Rd
0bbdfbf6b8ca795b3fdc02f53c74f209 *man/transformPhylo.MCMC.Rd
db56d44cc516fe262c7acfaf4df8a9cf *man/transformPhylo.ML.Rd
7f4aed65e7f07c9c9726c7627599daf2 *man/transformPhylo.Rd
9e55e8390d4a426c46cafeb6fad21baa *man/transformPhylo.ll.Rd
d392ff5b3316c2a73693931d0fc10196 *man/transformPhylo.sim.Rd
5083a40b221ad406ef0e59f8c6809f23 *man/transformRateMatrix.Rd
d35b318af066274b2edfaade1e07eaf7 *vignettes/motmot.2.0.vignette.Rmd
afedcfae1f6cc5f367dceeb3b7b7fac4 *vignettes/myref_small.bib
