7a7a7c33132873aae6cb6e368c3b5b32 *DESCRIPTION
5d82e9946ace180a66d2fe6db26780f1 *LICENSE
51745bffb92b082c1e53c818530f0c20 *NAMESPACE
4cb14cc19f78420e2ad189a0d6681d20 *R/RcppExports.R
bc5f9aaa4bae796bc6356233ba23641e *R/calculate.gene.rank.R
c6d322165785a8fa5b40ffa0f41b6806 *R/data.R
8fe984d847aebe8bd7d1027f5b5d2db1 *R/import.R
3c123d90a667dbf89091dade63e0fe11 *R/inferCSN-package.R
5179e97fc1dd607b3b1f7457df2c251f *R/inferCSN.R
7877479f4a1686cfff9305941ca572de *R/network.visualization.R
e49fdfb7a3c4e3e0683432b87165a13d *R/network_sift.R
09cdc9df1eb35c9b9db3f96bb29496b2 *R/performance.calculate.R
e8d4d6396f1f9a2f8832b0f601d24b38 *R/plotting_functions.R
dbea8e4ce5a73cd53be033f45247166b *R/sparse.regression.R
35ad7fd48c815aa96dd9138fef01b5c4 *R/utils.R
d5353d3f570bb96aecd3a121d02adbec *README.md
c865cc831c3370c46b93efe15036051c *data/example_ground_truth.rda
7876ce105fe62fea51999bf207905aab *data/example_matrix.rda
e14e9b714f5e7617ed2c4b727cc48e34 *data/example_meta_data.rda
20028a9b21c91cdd40bff32eb47da3e5 *man/acc.calculate.Rd
6fe7d40b134589fa78962f3a4a638698 *man/as_matrix.Rd
22ac94dd61556e306afcb7fac6c631c9 *man/auc.calculate.Rd
b3647c37355dcfda3ed2456e5be1667c *man/calculate.gene.rank.Rd
d95d1237f00cebdccc9b87a84ab21a3d *man/check.parameters.Rd
852b7ad289881bacb30cf00b6d636f62 *man/coef.SRM_fit.Rd
bea92ebfc3cc63a4375cd260d58a1e42 *man/example_ground_truth.Rd
369f179d33e62b3546d42b46591e907d *man/example_matrix.Rd
4395d138df2bb37a4603150b74963ca3 *man/example_meta_data.Rd
4cde6e83b2d3b96a27c12cd1ba8e0091 *man/figures/inferCSN.svg
59e13bbcf63a9e9fdd8780892fca93a9 *man/figures/logo.svg
0ee09d1af60d64a2d0b484fd53b6f4f9 *man/filter_sort_matrix.Rd
660b9f63753b32fb314e0b0426641a72 *man/inferCSN-package.Rd
aeb9829d471f37c2a67ac2fcf6bfc44b *man/inferCSN.Rd
55d7dca784553b8335e40e5383932280 *man/model.fit.Rd
e6be8043e958b17758e1ee1dc6049a86 *man/network.heatmap.Rd
c8f8bd085df8e1e67a545500917cc86c *man/network_format.Rd
4d37e84a4f0e59c4a0cd233695ce8bb0 *man/network_sift.Rd
b9ce4fb9d00a5b82f22de24f477aab76 *man/normalization.Rd
d9c07f131a71416659ab93c8be6e952b *man/parallelize_fun.Rd
c5d5053c700564015cdfcc430064d126 *man/plot_contrast_networks.Rd
4d3a09160fc9df9c28988d6995549b6d *man/plot_dynamic_networks.Rd
6d96ec3a6b5523d50f30d6139d5b2b66 *man/plot_scatter.Rd
ce795a145a3d52c1e69420300875e50c *man/plot_static_networks.Rd
22eb496af3e810feecd27c03bb334610 *man/predict.SRM_fit.Rd
6ce12a2e580bed1cad784d5ff5d32d87 *man/prepare.performance.data.Rd
97db8cfd5710b3f88301b3228c1c8ab7 *man/print.SRM_fit.Rd
e097fb0f834bfc70cd722f45cfba9529 *man/r_square.Rd
2ae7e55e80f568d18f8bec5daabe2a0b *man/rse.Rd
0b3063ee7cea045057b8f12bbad36d88 *man/single.network.Rd
30a773ce548fa7771efdb6773a2e0920 *man/sparse.regression.Rd
7927698720ae259ac54f9a5928d47af2 *man/sse.Rd
0ad065da42f23eebe3d7805617390682 *man/table.to.matrix.Rd
0347ffda63bae663f9354d1e0b948d57 *src/BetaVector.cpp
dadb1987bfb2f80d199a2e25b02a051d *src/CDL012LogisticSwaps.cpp
64737baec03e2641f58d5681381874d6 *src/CDL012SquaredHingeSwaps.cpp
6a4f677eff1881a88c670cf19c77773c *src/CDL012Swaps.cpp
d4f2e65104193ad8b04b23281a39cd8c *src/Grid.cpp
2ebc2a8b814581ce38dd0a53cf275ce5 *src/Grid1D.cpp
8748c274ffef69c8dc7f2c0f88228b22 *src/Grid2D.cpp
de248aacefd130f4c49b6e581d056686 *src/Interface.cpp
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars.win
41bc93afdbfbce896558b943b882d7e7 *src/Normalize.cpp
fb4ab9386a76250a1012fc799738465f *src/README.cpp
9b2d5112f4a516f521f0bc23155d8a36 *src/RcppExports.cpp
b8da420687f2f9943625f9c8cddda799 *src/Test_Interface.cpp
f34ac4c9ea5234a36682d3cd099a8a0c *src/asMatrix.cpp
e447698f0493b967abd0e0aaf2eca2c2 *src/include/BetaVector.h
e9aab72b23846ad7db4b0fa1e2597d09 *src/include/CD.h
3006562807501591e7979d1b5af7c039 *src/include/CDL0.h
c9262d8cc37f5ad121511ab15f1ef234 *src/include/CDL012.h
da6865571ac3a696ef96d8d10c8b7c9a *src/include/CDL012Logistic.h
c36020aa6b5463f99a6265a18d745473 *src/include/CDL012LogisticSwaps.h
75978be275c2af4e57318dda1d2ee505 *src/include/CDL012SquaredHinge.h
6acf66ba1b050b4869097aa56ed7cb10 *src/include/CDL012SquaredHingeSwaps.h
8d625ee2d1001e5fbd827359787faa78 *src/include/CDL012Swaps.h
3c65caa73f70506f9914640898d13c6a *src/include/CDSwaps.h
3e191a22fe2bee08cfd53dd8cd32f8a1 *src/include/FitResult.h
fa0e95061a24b8e548c611d4304664d0 *src/include/Grid.h
1e34795fcfd7f91aa821223794050e00 *src/include/Grid1D.h
5155c4b89da70421f47b4e82a0111866 *src/include/Grid2D.h
5f89a8eaba4ab540eb63046a1e83dbe6 *src/include/GridParams.h
0dc02d87935e4bf4860d17b010a91bd8 *src/include/Interface.h
68b70f6c4a8c08a8d7f6bb97746d3d49 *src/include/MakeCD.h
aea94cb863ab3243b5c681f9d905c175 *src/include/Model.h
8650499eeb16d4bf88397c8ed3c29c92 *src/include/Normalize.h
cdde68a3cfff76e8a18c34209800bea5 *src/include/Params.h
0816e979947d47e1e91c6327a62d641c *src/include/Test_Interface.h
f3a3cce4a45a5306180127b28e5aa66c *src/include/utils.h
624b128f72d3cfac81caf726f91d01dd *src/table_to_matrix.cpp
82ebc8c76e0a000e5bf6e391edd49ff3 *src/utils.cpp
