f4aed7f80601bce1ec6884b6f758989d *DESCRIPTION
192d394479e38e6546b577052c960cf0 *NAMESPACE
fe2d85277e051c7b55cf651114ac0ac5 *NEWS.md
f2876c8365a7c4f796d161b066b904fd *R/adjclust.R
50d71f4688eecdddcc578c3d02261af3 *R/band.R
d8528b56095bcb847d00096c313c3dd2 *R/buildHeap.R
e2c0d90bf62def7e6a5a7b4831b41029 *R/chac.R
f5caee09173bea5dc2f9288f27c5f882 *R/findMatL.R
694bdbd30efc455e45ac20feaf1b9ced *R/findRMatR.R
9b48e5658329a936e9d0954be3eecbf5 *R/findSparseMatL.R
7005cf32c1eb9ecaa798fe10db54e4c4 *R/findSparseRMatR.R
92a25257c66ddd8547eccd5eccc4245e *R/hicClust.R
0112812914c5f30bce6888391cdc2c5a *R/hic_imr90_40_XX.R
c97e59b221235d72c7643ae7b5cadcde *R/lambda.R
88408ad7e9f753d254f854f90cd81115 *R/modify.R
d7ebac442b239fac0f1c01d1bfd65450 *R/modifySparse.R
a792d9b057d8234e40603a684b1e05d5 *R/res_adjclust_0.3.0.R
5e692200b0a5e35977b8a819c9dfb8b7 *R/snpClust.R
2c5e1021a8894709512177d7522a70c6 *R/sparseband.R
4cbf839fed8d800ff5bcc163610b94de *README.md
6ed206ef2a44d9ac798e128c1411a9ce *build/vignette.rds
53f907f9ffc6370b3541a391ccc7e70d *data/datalist
2a1ddf9d3ae6e445fa2cf3659c451e8b *data/hic_imr90_40_XX.rda
d35fd6b35cdb510465a49e72d7301b6d *data/res_adjclust_0.3.0.rda
938ff046383fc2f9a53ab8170df1c6fe *inst/doc/hicClust.R
8b797f489c3a07afe7ee6889713b9592 *inst/doc/hicClust.Rmd
0e3fa2a83e03c2f8461e36ae867b848e *inst/doc/hicClust.html
aa9b2417916eb3827fe7b481074cb6fb *inst/doc/notesCHAC.R
834f9e3c84073448b89afe16ecf42bb7 *inst/doc/notesCHAC.Rmd
41f386c1137d7694e71cca33139f6785 *inst/doc/notesCHAC.html
16450edfd73018bd808dc258c88eff42 *inst/doc/snpClust.R
18ef6d6199fd96a41c058e0edeaaadac *inst/doc/snpClust.Rmd
4b5a07fa5bdeabaa1edb96a147382f74 *inst/doc/snpClust.html
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8eb6735810efff66786e22d428cf992b *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
102754b09fb732841865a6c08d68d403 *man/adjClust.Rd
92826014862f42dec05b50d93f0843cf *man/chac.Rd
71537fbd32262d237055c31d1054d70b *man/figures/README-adjClust-1.png
50ec224b09682cd61905a966240195c8 *man/figures/README-hicClust-1.png
ea4471a7a4128ba810a472f2beed7946 *man/figures/README-hicClust-2.png
3496427d6a849e92bc3b8242d61bfb98 *man/figures/README-snpClust-1.png
c99368f0d8c3eefcd246c2d442de67d4 *man/figures/README-snpClust-2.png
46464e67eba0ada5e3065221fb46c76c *man/hicClust.Rd
14c6aa450e30c221a0848029a250b5d4 *man/hic_imr90_40_XX.Rd
bc3c7f071da065ead847e1a6014fade4 *man/res_adjclust_0.3.0.Rd
7cb44e29b6b87800d6c6e5a93bb14709 *man/snpClust.Rd
d0510cde25d952851c21dd931788ba75 *src/CMakeSparseDiagOne.c
94eebc05a448a828fb092abd76d70515 *src/CSparseCondnCheck.c
d46f3a7b376966666138e1bbae3d31d7 *src/CSparseMatLR.c
53cf5c6322a03f7499517a5ecc6a3324 *src/CmatLR.c
1d4289fa38b8915c164b55d5c1056276 *src/bandFunctions.c
97f46a70692b2f2005d04bf087a2def8 *src/check.c
0d049782cb95cc8d88cd585d11387507 *src/lambda.c
a00bfc0f980aaf821c59ba0e23f92228 *src/mainFunctions.c
7c22b1b500cab25872924e218f1645f5 *src/registerDynamicSymbol.c
5e2bc82a33fd8f640bc5d1a0df6313fa *src/sparseband.c
002e00bf00a73341ff66bd5934f7d6cb *src/transform.c
4543c7812c549c8a643d02ecafc49922 *tests/testthat.R
fcea69986f4a76565b0d64ada0785195 *tests/testthat/test_SparseBand_dgc_dsc.R
ba84c1faf2e504de66382b297fc13535 *tests/testthat/test_adjclust_equivalentTo_rioja.R
1f2a97a20e3e62ca73019be7114045b9 *tests/testthat/test_ascendingCompatibility.R
9d815f424ddcd4628820947793e670d0 *tests/testthat/test_dense_sparse_comparison_1.R
758f07dc368648abdd0064421fb7a936 *tests/testthat/test_dense_sparse_comparison_2.R
9184993650ee21ae6e04a9bf82a9c399 *tests/testthat/test_hicClust.R
39a3d90eb551623a4c0422e48e1a4f8d *tests/testthat/test_modify.R
2231d5d05cd2aec7fd705468e246a26d *tests/testthat/test_modifySparse.R
148c856432c980074350071e083b32cb *tests/testthat/test_snpClust.R
717189cef15648b2bc8ce9a2e819fcfb *tests/testthat/test_snpClust_NA-in-LD.R
8b797f489c3a07afe7ee6889713b9592 *vignettes/hicClust.Rmd
834f9e3c84073448b89afe16ecf42bb7 *vignettes/notesCHAC.Rmd
18ef6d6199fd96a41c058e0edeaaadac *vignettes/snpClust.Rmd
