9434c1c3c55cb035a6e02fab0568cca0 *DESCRIPTION
1b629f05259565d5743051c1c806748e *NAMESPACE
46aeabcf4b382085daf1dfb0fae0a2cb *NEWS.md
5101f007d534f248a19d17e0e83ac376 *R/Cox_Regression.R
44b570bb463c535fe4375c3ce64ba5ef *R/PlotTypes.R
9db0ff9611434f31603c2b3f329063b6 *R/Poisson_Regression.R
0bb14096fdbf199509183d50c9ad666b *R/RcppExports.R
1478fca0ee4bc93bcec3302a007471e4 *R/Utility.R
cb1cd413b9564d495be322c6e60f929d *R/utils-roxygen.R
e1139d9ac076d8c791d2f56778522c4c *README.md
c74886ab330b72d9a4930d66f270bd60 *build/vignette.rds
38ba0348cef0ac8408c22acb51d50d83 *cleanup
64726fb8cb6e37288c195da116ec2ec3 *cleanup.win
3d9610c446e77cfc847bcbe9e642d597 *configure
9c8357a3b6c48602894d5596e11575e1 *inst/CITATION
4ab280192d23ccc9a2e5d0c8889fbb69 *inst/WORDLIST
fb3bf692f10b750c63d9fe07011da7a9 *inst/doc/Alt_Distrib_Starts.R
8fd16c04b2737ca35f42e2232ccdfa80 *inst/doc/Alt_Distrib_Starts.Rmd
21c1a0e29e0de893b863fe2f5f085170 *inst/doc/Alt_Distrib_Starts.html
bd50b8044e201566e3cec491a7fa15c6 *inst/doc/Alt_Run_Opt.R
d63855ab893a065f7efce9d4d2c1a646 *inst/doc/Alt_Run_Opt.Rmd
5a6d7a4a9ee4e8fa6a6414d5154c23c9 *inst/doc/Alt_Run_Opt.html
83d75af913a808c2745393d83763fcbf *inst/doc/Control_Options.R
0d3bd8965fc8c85ae346300a586231f1 *inst/doc/Control_Options.Rmd
d3108ecf88b9caedf89a314fd353e7f0 *inst/doc/Control_Options.html
3662984cdb292895f37343c366044026 *inst/doc/Dose_Formula_Inputs.R
10d2408aa694af3416258d18ee23bb22 *inst/doc/Dose_Formula_Inputs.Rmd
5c04c03dd0189a79a44eb63b8231b9b4 *inst/doc/Dose_Formula_Inputs.html
2fc2c877d20dee7587c230dd620db5a6 *inst/doc/Excess_and_Predicted_Cases.R
6f5447f747ca4a4f21328ad9f0ed895e *inst/doc/Excess_and_Predicted_Cases.Rmd
6410396f6c722eb5f483705501e2a14c *inst/doc/Excess_and_Predicted_Cases.html
41b8cb200a354cb4e9b2ede9dc548630 *inst/doc/Multi_Realization.R
06e2be6f46cb9eddaad0517b6cf8722b *inst/doc/Multi_Realization.Rmd
ffb1eed825d17fb52c30a434006b80ee *inst/doc/Multi_Realization.html
b393ec57f9ceeaf554144004365a2c5a *inst/doc/Plotting_And_Analysis.R
d55895902a911ed49cc6d7fc0906ae84 *inst/doc/Plotting_And_Analysis.Rmd
b3dc069a8af3a2fa83af9acc166e6212 *inst/doc/Plotting_And_Analysis.html
f0a477c4226e88f6b520af9dbfab6313 *inst/doc/Script_Comparison_Epicure.R
30e40bbdf4c978d909bb93e3f7b54b0c *inst/doc/Script_Comparison_Epicure.Rmd
2c9457dba524d6f54c10cd96bed2dbf1 *inst/doc/Script_Comparison_Epicure.html
8238e62501c1cb20038e6c58a8ed7569 *inst/doc/Starting-Description.R
1543fd66b7014918ac72c9af1d773e0b *inst/doc/Starting-Description.Rmd
2caa640e31adb3b6a765301b2f05fd9c *inst/doc/Starting-Description.html
1f3898bacba95d43b29f12d1463e4646 *inst/doc/Time_Dep_Cov.R
437197cf3e0454b6dce82f2e95be00fc *inst/doc/Time_Dep_Cov.Rmd
4239a005ec1bc0dfcb52c0962a418404 *inst/doc/Time_Dep_Cov.html
c4a842cbf2ace0e2d8ceb41d0b6e1b7a *inst/doc/Wald_and_Log_Bound.R
09feb1279b3940fd0176a8e3fcd13ccd *inst/doc/Wald_and_Log_Bound.Rmd
2f5a38733b5fa92ba29799d193914755 *inst/doc/Wald_and_Log_Bound.html
2ea083e301051ebb5843de758d3c4a53 *man/Check_Dupe_Columns.Rd
3bb667465b8817bce1ec978de3842a82 *man/Check_Trunc.Rd
7265800a002c018f53c37dfb1d2d36ac *man/Check_Verbose.Rd
f2daf1f4c4fd4d7bdb58a7646eaa3b20 *man/Correct_Formula_Order.Rd
2ca07ba8bb4d34e7c794ddef6772d247 *man/Cox_Relative_Risk.Rd
9051037265d31927cb033c3ee276fbfa *man/Date_Shift.Rd
f43113dd3adb0ce686fe1df86d3a6405 *man/Def_Control.Rd
3cf78eebc1c53b25b86b4d6c6682e1e8 *man/Def_Control_Guess.Rd
f54d50e4de6ee9ce3f7c612ee3ae7956 *man/Def_model_control.Rd
08529d4d57f8771a9f0fa83716a0e003 *man/Def_modelform_fix.Rd
ce68b9164388aa3b0c5caa0c12438940 *man/Gather_Guesses_CPP.Rd
59441e37290afc048bd628e9b0edd634 *man/GetCensWeight.Rd
9595422479c2f2dcec7b6bff30912e84 *man/Joint_Multiple_Events.Rd
6b20b598b12d1498d7599635a6c1828d *man/Likelihood_Ratio_Test.Rd
b188b9f818b7e5d8b169f07679b4f972 *man/Linked_Dose_Formula.Rd
f5ad28450c0deba3db2a2ee48fc94293 *man/Linked_Lin_Exp_Para.Rd
81bbcb4460d2c5fbf0aedd02e61e105a *man/OMP_Check.Rd
b21c51d3ae26ee66aa36cc6bd1fe3b05 *man/Rcomp_version.Rd
20c36af88c4b9cfaeaae1b4a14da9bd7 *man/Rcpp_version.Rd
b42ca1623dd0ed320272af12db994dc8 *man/Replace_Missing.Rd
4c1101a40b6f7e34d777ce0ede82cb0b *man/RunCoxNull.Rd
3ee7dd8793b4ddc56af2d4ef7555488e *man/RunCoxPlots.Rd
9814ee950e2ea5756c61a34808b19216 *man/RunCoxRegression.Rd
ebeabcf6cd799a51da5e7feba838833f *man/RunCoxRegression_Basic.Rd
95a80d02680ada17ccdf1d1b1dfa53f8 *man/RunCoxRegression_CR.Rd
a61b12ce1c5ce3b17006a46deb5631cd *man/RunCoxRegression_Guesses_CPP.Rd
ba98491ea75a2bd0c94ec7f5669ba3f8 *man/RunCoxRegression_Omnibus.Rd
cf3557b601f61b9e91a1747cb609ddd9 *man/RunCoxRegression_Omnibus_Multidose.Rd
ebb03fdd9f9482e1545eb280e8b10bf9 *man/RunCoxRegression_STRATA.Rd
ada6b3611c239b7611c5de123bb56c6c *man/RunCoxRegression_Single.Rd
f90f87f91142ecb9efcac884aeddcf7b *man/RunCoxRegression_Tier_Guesses.Rd
92938b5a19eac405186a07fd80339c9d *man/RunPoissonEventAssignment.Rd
f23fadcb796819bbc77c2ca171d0e0f5 *man/RunPoissonEventAssignment_bound.Rd
229068ef1fcd3bc7469a56092613e08f *man/RunPoissonRegression.Rd
6ed19e64685e76dd244ec2e0a930cf5c *man/RunPoissonRegression_Guesses_CPP.Rd
0180c79fd53f4e44b85e883c67f27e66 *man/RunPoissonRegression_Joint_Omnibus.Rd
86e89fd5a569e33288d68974737f0ee6 *man/RunPoissonRegression_Omnibus.Rd
877741cb7c97c355976ecc4ab4c1e1fe *man/RunPoissonRegression_Residual.Rd
21f0eab507f9eee2af29b10ebc605843 *man/RunPoissonRegression_STRATA.Rd
9360e4365a17e288e03d3ab014c084be *man/RunPoissonRegression_Single.Rd
350449f2e1ad0a4473aa9233e1df4ae3 *man/RunPoissonRegression_Tier_Guesses.Rd
6fbef950a139b38af5d736c64d18de53 *man/System_Version.Rd
21916ad8552f2fa0ce3ad3aea15ad2dc *man/Time_Since.Rd
505873a82f8962fc06e587f91c78e7df *man/factorize.Rd
02825ede3a1c22cc862f279b6f985e17 *man/factorize_par.Rd
600fce9f5816d0ed2cb10e903ec2c048 *man/gcc_version.Rd
4245aa6dc879c777e69bf2815b00f35f *man/gen_time_dep.Rd
ceb3bf9413687c09ca86662b10f42bc6 *man/get_os.Rd
de6393917f0450a900570be87b6a237a *man/interact_them.Rd
871fd3155101f186dbe0a0b3650b189a *src/Calc_Repeated.cpp
c20ffee48891f634e4e8d6868d91d4bc *src/Calc_Repeated.h
62e402dd7a9a38a2d192195059a01c39 *src/Colossus_types.h
494bad4cf751c1a6b7acebed66bc9ae3 *src/Main_Functions.cpp
0688e3caadffb0a7de944a4c79418d09 *src/Main_Functions.h
fee02fbe88c04c99eb902a6c88534c3c *src/Makevars.in
2160fcff054e7f622f40f10f4c1b9ac4 *src/Makevars.win
c0d1f2eeb1f46eecc7ac75b314bf0d5e *src/Omnibus_Pieces.cpp
a7430e3f685e880498ba6af983fc7b36 *src/Omnibus_Pieces.h
186070cdb12209ad7d8ba421c768cf1b *src/Plot_Extensions.cpp
599417574debf98235cf16577b5ddcf7 *src/Plot_Extensions.h
f22f337a6ed8c562d4b1036f5779bf18 *src/R_Interface.cpp
e38f4f3e362a578bea2a0db7396164cd *src/R_Interface.h
beaa30457ff0483ff2fdccc953876854 *src/RcppExports.cpp
9daaada5219ca417b76c19e52e89aef0 *src/Step_Calc.cpp
127b1f7a9b1469991a7ce6459ab403e3 *src/Step_Calc.h
96ba9e771ab7f60f775f114bf2b8fa36 *src/Subterms_Risk.cpp
ed8a25958159b14e6fa1c51a2e8bb6d0 *src/Subterms_Risk.h
50f330eeca8db092d6807e04457bd06d *tests/spelling.R
0350350391ab30b3e0a0ec3353cc8b7c *tests/testthat.R
25c6bb41e6ad82db306a1f06bad00847 *tests/testthat/Assigned_Check.csv
60e01a966792bc8d7f6e27124dc8f029 *tests/testthat/MULTI_COV.csv
96831dc35f40c757538a7ac7a97536dd *tests/testthat/base_example.csv
44efefec3c4c2c8c075996d5b82a8960 *tests/testthat/dose.csv
c2d2fe68f1664d6b7c6fd77cd2de9916 *tests/testthat/l_pl_0.csv
e34d071e947b48c8c0328aaf56928956 *tests/testthat/l_pl_A_0.csv
ff21327faf666f2def06035a8592e761 *tests/testthat/ll_0.csv
fc69bff3eb2f66b8cedcf86a832666c9 *tests/testthat/ll_cens_0.csv
f8a0597d561e296f39774a158f310277 *tests/testthat/ll_comp_0.csv
81197084177f468d2eb2581b45402e03 *tests/testthat/test-Cox_Plot.R
47ccf99086dcd1d316e7d3dbc5e43c46 *tests/testthat/test-Cox_Regression.R
c6dc36d83831fc3483e2b1872956f33f *tests/testthat/test-Poisson_Regression.R
21f385ed73e2c87d3f6393af70c8940b *tests/testthat/test-Poisson_Residual.R
eaee01c4dea9e6602af668f30c249498 *tests/testthat/test-Utility.R
fd1e5a738fa184b136ec29d4aa033c5b *tests/testthat/test-assigned.R
ea3174820c545ddb167ac198a55c4366 *tests/testthat/test-for_coverage.R
dad56e29278f9d46b83427748ca754ef *tests/testthat/test-joint.R
172288fb9ccbeca5f6d493b052a36090 *tests/testthat/test-logbound.R
0fec1d1f08418635c650fcad80a85c48 *tests/testthat/test-multidose.R
a29c67b642f205d83f464530041fa431 *tests/testthat/test-omnibus.R
8b6b0a0e61f4d2cfbafcff6d1ef6d559 *tools/config.R
38ac37bc72560d175fd527894cf53735 *tools/config/cleanup.R
5454d6054979af30235a15f200c25f4f *tools/config/configure.R
8fd16c04b2737ca35f42e2232ccdfa80 *vignettes/Alt_Distrib_Starts.Rmd
d63855ab893a065f7efce9d4d2c1a646 *vignettes/Alt_Run_Opt.Rmd
0d3bd8965fc8c85ae346300a586231f1 *vignettes/Control_Options.Rmd
10d2408aa694af3416258d18ee23bb22 *vignettes/Dose_Formula_Inputs.Rmd
6f5447f747ca4a4f21328ad9f0ed895e *vignettes/Excess_and_Predicted_Cases.Rmd
06e2be6f46cb9eddaad0517b6cf8722b *vignettes/Multi_Realization.Rmd
d55895902a911ed49cc6d7fc0906ae84 *vignettes/Plotting_And_Analysis.Rmd
30e40bbdf4c978d909bb93e3f7b54b0c *vignettes/Script_Comparison_Epicure.Rmd
1543fd66b7014918ac72c9af1d773e0b *vignettes/Starting-Description.Rmd
437197cf3e0454b6dce82f2e95be00fc *vignettes/Time_Dep_Cov.Rmd
09feb1279b3940fd0176a8e3fcd13ccd *vignettes/Wald_and_Log_Bound.Rmd
