Calculate Model-Based Metrics of Proportionality on Count-Based Compositional Data

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Documentation for package ‘countprop’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

convertSigma	Convert between CLR and ALR covariance matrices
ebic	Extended Bayesian Information Criterion
ebicPlot	Extended Bayesian Information Criterion Plot
logitNormalVariation	Logit Normal Variation
logLik	Log-Likelihood
logVarTaylorFull	Full logp Variance-Covariance
mleLR	Maximum Likelihood Estimate for multinomial logit-normal model
mlePath	Maximum Likelihood Estimator Paths
naiveVariation	Naive (Empirical) Variation
pluginVariation	Plugin Variation (Deprecated)
singlecell	Single cell sequencing data from mouse embryonic stem cells in G1 phase