* using log directory 'd:/Rcompile/CRANpkg/local/4.4/move.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'move/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'move' version '4.2.6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'move' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.3.0' * used C++ compiler: 'g++.exe (GCC) 13.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [11s] OK * checking whether the package can be loaded with stated dependencies ... [11s] OK * checking whether the package can be unloaded cleanly ... [11s] OK * checking whether the namespace can be loaded with stated dependencies ... [11s] OK * checking whether the namespace can be unloaded cleanly ... [11s] OK * checking loading without being on the library search path ... [11s] OK * checking whether startup messages can be suppressed ... [10s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [33s] OK * checking Rd files ... [3s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [11s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [63s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [81s] ERROR Running 'test-all.R' [81s] Running the tests in 'tests/test-all.R' failed. Complete output: > library(testthat) > test_check("move") Loading required package: move Loading required package: geosphere Loading required package: sp Loading required package: raster Saving _problems/test.emd-96.R Saving _problems/test.emd-152.R Saving _problems/test.emd-185.R List of 2 $ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ... $ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ... List of 2 $ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ... $ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ... List of 2 $ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ... ..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ... $ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ... ..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ... class : Move features : 919 extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax) crs : +proj=longlat +datum=WGS84 +no_defs variables : 17 names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ... min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ... max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ... timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration) sensors : gps indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time unused rec. : 1071 study name : Urban fisher GPS tracking date created: 2023-01-20 16:56:43 class : DBBMM dimensions : 42, 45, 1890 (nrow, ncol, ncell) resolution : 759.9677, 759.9677 (x, y) extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax) crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs source : memory names : layer values : 0, 0.06319155 (min, max) List of 2 $ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ... $ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ... List of 2 $ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ... $ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ... List of 2 $ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ... $ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ... List of 2 $ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ... $ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ... Formal class '.unUsedRecords' [package "move"] with 3 slots ..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ... ..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ... ..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables: .. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ... .. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ... .. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ... .. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ... .. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ... .. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ... .. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ... .. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ... .. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ... .. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ... Formal class '.unUsedRecordsStack' [package "move"] with 4 slots ..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ... .. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ... ..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ... ..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ... ..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables: .. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ... .. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ... .. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ... .. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ... .. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ... .. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ... .. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ... .. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ... .. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ... .. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ... .. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ... .. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ... ... computing starting delimiters [1] 0 -0.0000e+00 4 919 [1] 1 -1.5574e+00 4 680 [1] 2 -1.3639e+00 4 66 [1] 3 -1.0174e+00 4 45 [1] 4 -8.4560e-01 4 23 [1] 5 -7.7790e-01 4 13 [1] 6 -7.5598e-01 4 10 [1] 7 -7.4796e-01 4 8 [1] 8 -7.4349e-01 4 13 [1] 9 -7.3983e-01 4 11 [1] 10 -7.3618e-01 4 7 [1] 11 -7.3268e-01 4 16 [1] 12 -7.2911e-01 4 6 [1] 13 -7.2514e-01 4 9 [1] 14 -7.2179e-01 4 9 [1] 15 -7.1882e-01 4 9 [1] 16 -7.1578e-01 4 5 [1] 17 -7.1345e-01 4 5 [1] 18 -7.1146e-01 4 1 [1] 19 -7.1022e-01 4 5 [1] 20 -7.0936e-01 4 4 [1] 21 -7.0868e-01 4 5 [1] 22 -7.0826e-01 4 1 [1] 23 -7.0798e-01 4 3 [1] 24 -7.0791e-01 4 1 [1] 25 -7.0772e-01 4 1 [1] 26 -7.0767e-01 4 2 [1] 27 -7.0760e-01 4 0 [1] 28 -7.0758e-01 4 0 [1] 29 -7.0757e-01 4 0 [1] ... Stable clustering username: password: [ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • Function now defunct (2): 'test.getDataRepositoryData.R:3:3', 'test.getDataRepositoryData.R:79:3' • On CRAN (17): 'test.brownian.bridge.dyn.R:4:3', 'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3', 'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3', 'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3', 'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3', 'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3', 'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.web.R:13:3', 'test.web.R:33:3' • On Windows (1): 'test.move.R:51:3' • fails on old sp version (1): 'test.spTransform.R:10:3' • provides a problem that needs solving (1): 'test.move.R:4:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test.emd.R:96:3'): emd th complex ─────────────────────────────────── Error in `target != current`: comparison of these types is not implemented Backtrace: ▆ 1. └─testthat::expect_equal(emd(r1, r2, th = 12), emd(r2, r1), tolerance = 9e-05) at test.emd.R:96:3 2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance) 3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance) 4. ├─base::all.equal(x, y, ...) 5. └─base::all.equal.default(x, y, ...) 6. └─base::all.equal.numeric(target, current, ...) 7. └─base::attr.all.equal(...) 8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes) ── Error ('test.emd.R:152:3'): large threshold is same as full and order does not matter ── Error in `target != current`: comparison of these types is not implemented Backtrace: ▆ 1. └─testthat::expect_equal(e <- emd(s1, s2), emd(s1, s2, threshold = 100)) at test.emd.R:152:3 2. ├─testthat::compare(act$val, exp$val, ...) 3. └─testthat:::compare.default(act$val, exp$val, ...) 4. ├─base::all.equal(x, y, ...) 5. └─base::all.equal.default(x, y, ...) 6. └─base::all.equal.numeric(target, current, ...) 7. └─base::attr.all.equal(...) 8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes) ── Error ('test.emd.R:185:3'): emd with spatial objects, compare spdf and sp ─── Error in `target != current`: comparison of these types is not implemented Backtrace: ▆ 1. └─testthat::expect_equal(emd(a, b), emd(ad, bd)) at test.emd.R:185:3 2. ├─testthat::compare(act$val, exp$val, ...) 3. └─testthat:::compare.default(act$val, exp$val, ...) 4. ├─base::all.equal(x, y, ...) 5. └─base::all.equal.default(x, y, ...) 6. └─base::all.equal.numeric(target, current, ...) 7. └─base::attr.all.equal(...) 8. └─base::all.equal.character(nx, ny, check.attributes = check.attributes) [ FAIL 3 | WARN 11 | SKIP 22 | PASS 404 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [109s] OK * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [17s] OK * DONE Status: 1 ERROR