Package: metevalue
Type: Package
Title: E-Value in the Omics Data Association Studies
Version: 0.2.4
Date: 2023-05-26
Authors@R: c(person("Yifan", "Yang",  role = c("aut", "cre","cph"),
                    email = "yfyang.86@hotmail.com"),
            person("Xiaoqing", "Pan",  role = "aut"),
            person("Haoyuan", "Liu",  role = "aut"))
Maintainer: Yifan Yang <yfyang.86@hotmail.com>
Description: In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
License: Apache License (>= 2)
RoxygenNote: 7.2.1
Depends: sqldf, psych, dplyr, R (>= 3.5.0)
Encoding: UTF-8
Suggests: rmarkdown, prettydoc, knitr, ggplot2, tidyr, testthat (>=
        3.0.0)
VignetteBuilder: knitr
LazyData: true
Config/testthat/edition: 3
NeedsCompilation: no
Author: Yifan Yang [aut, cre, cph],
  Xiaoqing Pan [aut],
  Haoyuan Liu [aut]
Packaged: 2023-05-26 13:20:20 UTC; yifanyang
Repository: CRAN
Date/Publication: 2023-05-26 15:20:06 UTC
Built: R 4.4.3; ; 2025-12-15 04:38:29 UTC; windows
