* using log directory 'd:/Rcompile/CRANpkg/local/4.4/survminer.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'survminer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'survminer' version '0.5.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'survminer' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.0Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s] OK
* checking whether the package can be unloaded cleanly ... [4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s] OK
* checking whether the namespace can be unloaded cleanly ... [5s] OK
* checking loading without being on the library search path ... [4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [98s] ERROR
Running examples in 'survminer-Ex.R' failed
The error most likely occurred in:

> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
> 
> ### ** Examples
> 
> 
> library("survival")

Attaching package: 'survival'

The following object is masked from 'package:survminer':

    myeloma

> library("magrittr")
> 
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+                data = colon)
> surv_pvalue(fit)
  variable      pval   method pval.txt
1      sex 0.6107936 Log-rank p = 0.61
> 
> 
> # Case 2: List of formulas and One data set.
> #   - Different formulas are applied to the same data set
> #   - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+  sex = Surv(time, status) ~ sex,
+  rx = Surv(time, status) ~ rx
+ )
> 
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
  variable      pval   method pval.txt
1      sex 0.6107936 Log-rank p = 0.61

$`colon::rx`
  variable         pval   method   pval.txt
1       rx 4.990735e-08 Log-rank p < 0.0001

> 
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+                data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
  variable      pval   method pval.txt
1      sex 0.6107936 Log-rank p = 0.61

$`lung::sex`
  variable        pval   method   pval.txt
1      sex 0.001311165 Log-rank p = 0.0013

> 
> 
> # Case 4: List of formulas and List of data sets
> #  - Each formula is applied to each of the data in the data list
> #  - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> 
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
> 
> # Create a named list of formulas
> formula.list <- list(
+  sex = Surv(time, status) ~ sex,
+  adhere = Surv(time, status) ~ adhere,
+  rx = Surv(time, status) ~ rx
+ )
> 
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+                match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
    ▆
 1. ├─survminer::surv_fit(...)
 2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
 3. └─dplyr::combine(.)
 4.   └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
 5.     └─lifecycle:::deprecate_stop0(msg)
 6.       └─rlang::cnd_signal(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] OK
  Running 'testthat.R' [11s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [68s] OK
* checking PDF version of manual ... [26s] OK
* checking HTML version of manual ... [8s] OK
* DONE
Status: 1 ERROR, 1 NOTE