* using log directory 'd:/Rcompile/CRANpkg/local/4.4/psrwe.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'psrwe/DESCRIPTION' ... OK * this is package 'psrwe' version '3.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'psrwe' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 13.3.0' * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [7s] OK * checking whether the package can be loaded with stated dependencies ... [6s] OK * checking whether the package can be unloaded cleanly ... [7s] OK * checking whether the namespace can be loaded with stated dependencies ... [6s] OK * checking whether the namespace can be unloaded cleanly ... [6s] OK * checking loading without being on the library search path ... [11s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [24s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [19s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [62s] ERROR Error(s) in re-building vignettes: --- re-building 'ps_matching.Rmd' using rmarkdown --- finished re-building 'ps_matching.Rmd' --- re-building 'pskm_rct.Rmd' using rmarkdown --- finished re-building 'pskm_rct.Rmd' --- re-building 'pskm_single.Rmd' using rmarkdown --- finished re-building 'pskm_single.Rmd' --- re-building 'vignette.Rmd' using rmarkdown Quitting from vignette.Rmd:45-47 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! The `.dots` argument of `group_by()` was deprecated in dplyr 1.0.0 and is now defunct. --- Backtrace: ▆ 1. ├─base::plot(dta_ps, plot_type = "balance") 2. ├─base::plot(dta_ps, plot_type = "balance") 3. ├─psrwe:::plot.PSRWE_DTA(dta_ps, plot_type = "balance") 4. │ └─psrwe:::plot_balance(x, ...) 5. │ └─psrwe:::plot_balance_fac(...) 6. │ └─psrwe:::get_freq_tbl(...) 7. │ └─... %>% rename(Value = v) 8. ├─dplyr::rename(., Value = v) 9. ├─dplyr::mutate(., Cov = v) 10. ├─dplyr::mutate_if(., is.factor, as.character) 11. │ └─dplyr:::check_grouped(.tbl, "mutate", "if") 12. │ └─dplyr::is_grouped_df(tbl) 13. ├─dplyr::ungroup(.) 14. ├─dplyr::mutate(., Sum = sum(.data$n), Freq = .data$n/sum(.data$n)) 15. ├─dplyr::group_by(., !!as.name(var_groupby)) 16. ├─dplyr::count(., .dots = c(var_groupby, v)) 17. └─dplyr:::count.data.frame(., .dots = c(var_groupby, v)) 18. ├─dplyr::group_by(x, ..., .add = TRUE, .drop = .drop) 19. └─dplyr:::group_by.data.frame(x, ..., .add = TRUE, .drop = .drop) 20. └─dplyr::group_by_prepare(.data, ..., .add = .add, error_call = current_env()) 21. └─lifecycle::deprecate_stop("1.0.0", "group_by(.dots = )") 22. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rmd' failed with diagnostics: The `.dots` argument of `group_by()` was deprecated in dplyr 1.0.0 and is now defunct. --- failed re-building 'vignette.Rmd' SUMMARY: processing the following file failed: 'vignette.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR, 1 NOTE