* using log directory 'd:/Rcompile/CRANpkg/local/4.4/pmparser.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pmparser/DESCRIPTION' ... OK
* this is package 'pmparser' version '1.0.21'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pmparser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [14s] ERROR
  Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pmparser)
  > 
  > test_check('pmparser')
  Saving _problems/test_modify_pubmed_db_dup-53.R
  Saving _problems/test_modify_pubmed_db_dup-69.R
  Saving _problems/test_modify_pubmed_db_std-24.R
  Saving _problems/test_modify_pubmed_db_std-44.R
  [ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test_get_citation.R:4:3', 'test_get_citation.R:13:3',
    'test_get_pubmed_files.R:7:3', 'test_get_pubmed_files.R:20:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_modify_pubmed_db_dup.R:51:3'): modifyPubmedDb create is unique ──
  Error in `if (md5Database == md5Remote) {     message("Citation table in database is already up-to-date.")     return(invisible()) }`: argument is of length zero
  Backtrace:
      ▆
   1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:3
   2.   └─pmparser::getCitation(...)
  ── Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique ──
  Error in `if (md5Database == md5Remote) {     message("Citation table in database is already up-to-date.")     return(invisible()) }`: argument is of length zero
  Backtrace:
      ▆
   1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:3
   2.   └─pmparser::getCitation(...)
  ── Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard ──
  Error in `if (md5Database == md5Remote) {     message("Citation table in database is already up-to-date.")     return(invisible()) }`: argument is of length zero
  Backtrace:
      ▆
   1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:3
   2.   └─pmparser::getCitation(...)
  ── Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard ──
  Error in `if (md5Database == md5Remote) {     message("Citation table in database is already up-to-date.")     return(invisible()) }`: argument is of length zero
  Backtrace:
      ▆
   1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:3
   2.   └─pmparser::getCitation(...)
  
  [ FAIL 4 | WARN 0 | SKIP 4 | PASS 67 ]
  Error:
  ! Test failures.
  Warning message:
  call dbDisconnect() when finished working with a connection 
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s] OK
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [1s] OK
* DONE
Status: 1 ERROR