* using log directory 'd:/Rcompile/CRANpkg/local/4.4/Momocs.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'Momocs/DESCRIPTION' ... OK * this is package 'Momocs' version '1.5.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Momocs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [45s] OK * checking Rd files ... [6s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [22s] ERROR Running examples in 'Momocs-Ex.R' failed The error most likely occurred in: > ### Name: PCcontrib > ### Title: Shape variation along PC axes > ### Aliases: PCcontrib PCcontrib.PCA > > ### ** Examples > > bot.p <- PCA(efourier(bot, 12)) 'norm=TRUE' is used and this may be troublesome. See ?efourier #Details > PCcontrib(bot.p, nax=1:3) Error: ! `mutate_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `mutate()` instead. ℹ See vignette('programming') for more help Backtrace: ▆ 1. ├─Momocs::PCcontrib(bot.p, nax = 1:3) 2. ├─Momocs:::PCcontrib.PCA(bot.p, nax = 1:3) 3. │ └─Momocs:::morphospace2PCA(x, xax = i, yax = 1, pos = pos.i) 4. │ └─dplyr::bind_cols(df_shp, df_trans) %>% ... 5. └─dplyr::mutate_(...) 6. └─dplyr:::lazy_defunct("mutate") 7. └─lifecycle::deprecate_stop(...) 8. └─lifecycle:::deprecate_stop0(msg) 9. └─rlang::cnd_signal(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [8s] OK Running 'testthat.R' [8s] * checking PDF version of manual ... [56s] OK * checking HTML version of manual ... [53s] OK * DONE Status: 1 ERROR