* using log directory 'd:/Rcompile/CRANpkg/local/4.6/CloneSeeker.Rcheck'
* using R Under development (unstable) (2026-01-23 r89325 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'CloneSeeker/DESCRIPTION' ... OK
* this is package 'CloneSeeker' version '1.0.13'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CloneSeeker' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [106s] NOTE
  Running 'test01-Simplex.R' [2s]
  Comparing 'test01-Simplex.Rout' to 'test01-Simplex.Rout.save' ... OK
  Running 'test02-WV.R' [2s]
  Comparing 'test02-WV.Rout' to 'test02-WV.Rout.save' ... OK
  Running 'test03-simulate.R' [28s]
  Comparing 'test03-simulate.Rout' to 'test03-simulate.Rout.save' ...
69c69
<                              NAs    :428  
---
>                              NA's   :428  
71c71
<    Mode     NAs 
---
>    Mode    NA's 
127c127
<                               NAs    :282  
---
>                               NA's   :282  
129c129
<    Mode     NAs 
---
>    Mode    NA's 
151c151
<                               NAs    :340  
---
>                               NA's   :340  
230c230
<                                   NAs    :1e+06                   
---
>                                   NA's   :1e+06                   
232,236c232,236
<  Min.   : 12.00   Length   :1e+06  
<  1st Qu.: 61.00   N.unique :1e+00  
<  Median : 70.00   N.blank  :0e+00  
<  Mean   : 70.24   Min.nchar:8e+00  
<  3rd Qu.: 80.00   Max.nchar:8e+00  
---
>  Min.   : 12.00   Length:1000000    
>  1st Qu.: 61.00   Class :character  
>  Median : 70.00   Mode  :character  
>  Mean   : 70.24                     
>  3rd Qu.: 80.00                     
  Running 'test04-algorithm.R' [73s]
  Comparing 'test04-algorithm.Rout' to 'test04-algorithm.Rout.save' ...
161,164c161,164
<  1st Qu.: NA   1st Qu.: NA   N.unique :   0  
<  Median : NA   Median : NA   N.blank  :   0  
<  Mean   :NaN   Mean   :NaN   Min.nchar: Inf  
<  3rd Qu.: NA   3rd Qu.: NA   Max.nchar:-Inf  
---
>  1st Qu.: NA   1st Qu.: NA   Class :character  
>  Median : NA   Median : NA   Mode  :character  
>  Mean   :NaN   Mean   :NaN                     
>  3rd Qu.: NA   3rd Qu.: NA                     
181c181
<    Mode     NAs 
---
>    Mode    NA's 
229,232c229,232
<  1st Qu.:0.2914   1st Qu.:122.2   N.unique : 1  
<  Median :0.3333   Median :131.5   N.blank  : 0  
<  Mean   :0.3375   Mean   :137.0   Min.nchar: 7  
<  3rd Qu.:0.3632   3rd Qu.:156.0   Max.nchar: 7  
---
>  1st Qu.:0.2914   1st Qu.:122.2   Class :character  
>  Median :0.3333   Median :131.5   Mode  :character  
>  Mean   :0.3375   Mean   :137.0                     
>  3rd Qu.:0.3632   3rd Qu.:156.0                     
244,246d243
< Warning messages:
< 1: In min(ncs) : no non-missing arguments to min; returning Inf
< 2: In max(ncs) : no non-missing arguments to max; returning -Inf
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [19s] OK
* checking PDF version of manual ... [25s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 NOTE